Strain Fitness in Serratia liquefaciens MT49 around IAI46_16900

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16895 and IAI46_16900 are separated by 175 nucleotidesIAI46_16900 and IAI46_16905 are separated by 15 nucleotides IAI46_16895: IAI46_16895 - TIGR04028 family ABC transporter substrate-binding protein, at 3,541,968 to 3,543,593 _16895 IAI46_16900: IAI46_16900 - hypothetical protein, at 3,543,769 to 3,544,017 _16900 IAI46_16905: IAI46_16905 - MFS transporter, at 3,544,033 to 3,545,328 _16905 Position (kb) 3543 3544 3545Strain fitness (log2 ratio) -1 0 1 2at 3542.803 kb on + strand, within IAI46_16895at 3542.859 kb on + strand, within IAI46_16895at 3542.860 kb on - strand, within IAI46_16895at 3542.860 kb on - strand, within IAI46_16895at 3543.020 kb on + strand, within IAI46_16895at 3543.046 kb on + strand, within IAI46_16895at 3543.051 kb on - strand, within IAI46_16895at 3543.051 kb on - strand, within IAI46_16895at 3543.058 kb on - strand, within IAI46_16895at 3543.087 kb on + strand, within IAI46_16895at 3543.088 kb on - strand, within IAI46_16895at 3543.175 kb on + strand, within IAI46_16895at 3543.175 kb on + strand, within IAI46_16895at 3543.176 kb on - strand, within IAI46_16895at 3543.176 kb on - strand, within IAI46_16895at 3543.176 kb on - strand, within IAI46_16895at 3543.176 kb on - strand, within IAI46_16895at 3543.179 kb on + strand, within IAI46_16895at 3543.179 kb on + strand, within IAI46_16895at 3543.180 kb on - strand, within IAI46_16895at 3543.180 kb on - strand, within IAI46_16895at 3543.229 kb on + strand, within IAI46_16895at 3543.230 kb on - strand, within IAI46_16895at 3543.332 kb on + strand, within IAI46_16895at 3543.333 kb on - strand, within IAI46_16895at 3543.568 kb on - strandat 3543.572 kb on + strandat 3543.573 kb on - strandat 3543.587 kb on + strandat 3543.588 kb on - strandat 3543.588 kb on - strandat 3543.593 kb on + strandat 3543.593 kb on + strandat 3543.593 kb on + strandat 3543.594 kb on - strandat 3543.612 kb on + strandat 3543.613 kb on - strandat 3543.626 kb on - strandat 3543.633 kb on - strandat 3543.633 kb on - strandat 3543.636 kb on + strandat 3543.670 kb on - strandat 3543.683 kb on + strandat 3543.684 kb on - strandat 3543.684 kb on - strandat 3543.742 kb on - strandat 3544.298 kb on + strand, within IAI46_16905at 3544.305 kb on + strand, within IAI46_16905at 3544.306 kb on - strand, within IAI46_16905at 3544.307 kb on + strand, within IAI46_16905at 3544.307 kb on + strand, within IAI46_16905at 3544.308 kb on - strand, within IAI46_16905at 3544.340 kb on + strand, within IAI46_16905at 3544.340 kb on + strand, within IAI46_16905at 3544.341 kb on - strand, within IAI46_16905at 3544.341 kb on - strand, within IAI46_16905at 3544.341 kb on - strand, within IAI46_16905at 3544.391 kb on - strand, within IAI46_16905at 3544.459 kb on + strand, within IAI46_16905at 3544.783 kb on - strand, within IAI46_16905at 3544.785 kb on + strand, within IAI46_16905at 3544.786 kb on - strand, within IAI46_16905at 3544.801 kb on + strand, within IAI46_16905at 3544.801 kb on + strand, within IAI46_16905at 3544.802 kb on - strand, within IAI46_16905at 3544.807 kb on - strand, within IAI46_16905at 3544.946 kb on - strand, within IAI46_16905

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,542,803 + IAI46_16895 0.51 +0.9
3,542,859 + IAI46_16895 0.55 +1.1
3,542,860 - IAI46_16895 0.55 -0.2
3,542,860 - IAI46_16895 0.55 -0.6
3,543,020 + IAI46_16895 0.65 +0.6
3,543,046 + IAI46_16895 0.66 -0.2
3,543,051 - IAI46_16895 0.67 +0.5
3,543,051 - IAI46_16895 0.67 +0.3
3,543,058 - IAI46_16895 0.67 -0.0
3,543,087 + IAI46_16895 0.69 +0.8
3,543,088 - IAI46_16895 0.69 +0.7
3,543,175 + IAI46_16895 0.74 -0.8
3,543,175 + IAI46_16895 0.74 +1.1
3,543,176 - IAI46_16895 0.74 -0.3
3,543,176 - IAI46_16895 0.74 +0.2
3,543,176 - IAI46_16895 0.74 -1.2
3,543,176 - IAI46_16895 0.74 -0.5
3,543,179 + IAI46_16895 0.74 +0.1
3,543,179 + IAI46_16895 0.74 +0.5
3,543,180 - IAI46_16895 0.75 +2.1
3,543,180 - IAI46_16895 0.75 -0.1
3,543,229 + IAI46_16895 0.78 +1.1
3,543,230 - IAI46_16895 0.78 +1.5
3,543,332 + IAI46_16895 0.84 -0.2
3,543,333 - IAI46_16895 0.84 +0.7
3,543,568 - +0.5
3,543,572 + +0.1
3,543,573 - -0.6
3,543,587 + +0.7
3,543,588 - -0.6
3,543,588 - +0.7
3,543,593 + -0.3
3,543,593 + +0.5
3,543,593 + +1.0
3,543,594 - +0.4
3,543,612 + -0.3
3,543,613 - +0.4
3,543,626 - -0.8
3,543,633 - +1.2
3,543,633 - +2.3
3,543,636 + -1.0
3,543,670 - -0.2
3,543,683 + -0.6
3,543,684 - +0.1
3,543,684 - +0.5
3,543,742 - +0.6
3,544,298 + IAI46_16905 0.20 +1.2
3,544,305 + IAI46_16905 0.21 +0.1
3,544,306 - IAI46_16905 0.21 +0.4
3,544,307 + IAI46_16905 0.21 +0.5
3,544,307 + IAI46_16905 0.21 -0.9
3,544,308 - IAI46_16905 0.21 -0.0
3,544,340 + IAI46_16905 0.24 +0.5
3,544,340 + IAI46_16905 0.24 +1.5
3,544,341 - IAI46_16905 0.24 -0.7
3,544,341 - IAI46_16905 0.24 +0.9
3,544,341 - IAI46_16905 0.24 -0.8
3,544,391 - IAI46_16905 0.28 +0.4
3,544,459 + IAI46_16905 0.33 -0.1
3,544,783 - IAI46_16905 0.58 +1.0
3,544,785 + IAI46_16905 0.58 +0.2
3,544,786 - IAI46_16905 0.58 +1.0
3,544,801 + IAI46_16905 0.59 -0.4
3,544,801 + IAI46_16905 0.59 +0.3
3,544,802 - IAI46_16905 0.59 +0.7
3,544,807 - IAI46_16905 0.60 +0.8
3,544,946 - IAI46_16905 0.70 -0.7

Or see this region's nucleotide sequence