Strain Fitness in Serratia liquefaciens MT49 around IAI46_16260

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16250 and IAI46_16255 are separated by 232 nucleotidesIAI46_16255 and IAI46_16260 are separated by 342 nucleotidesIAI46_16260 and IAI46_16265 are separated by 284 nucleotides IAI46_16250: IAI46_16250 - transcriptional regulator RcsA, at 3,408,422 to 3,409,051 _16250 IAI46_16255: IAI46_16255 - protein DsrB, at 3,409,284 to 3,409,487 _16255 IAI46_16260: IAI46_16260 - transcription antiterminator/RNA stability regulator CspE, at 3,409,830 to 3,410,042 _16260 IAI46_16265: IAI46_16265 - ion transporter, at 3,410,327 to 3,411,193 _16265 Position (kb) 3409 3410 3411Strain fitness (log2 ratio) -2 -1 0 1at 3408.989 kb on - strandat 3408.989 kb on - strandat 3408.993 kb on - strandat 3409.053 kb on + strandat 3409.053 kb on + strandat 3409.054 kb on - strandat 3409.070 kb on - strandat 3409.128 kb on + strandat 3409.128 kb on + strandat 3409.128 kb on + strandat 3409.137 kb on + strandat 3409.138 kb on - strandat 3409.268 kb on - strandat 3409.278 kb on - strandat 3409.307 kb on + strand, within IAI46_16255at 3409.308 kb on - strand, within IAI46_16255at 3409.391 kb on - strand, within IAI46_16255at 3409.394 kb on + strand, within IAI46_16255at 3409.395 kb on - strand, within IAI46_16255at 3409.395 kb on - strand, within IAI46_16255at 3409.447 kb on - strand, within IAI46_16255at 3409.597 kb on + strandat 3409.703 kb on - strandat 3409.720 kb on + strandat 3409.721 kb on - strandat 3409.832 kb on - strandat 3409.832 kb on - strandat 3409.948 kb on - strand, within IAI46_16260at 3410.037 kb on - strandat 3410.037 kb on - strandat 3410.047 kb on - strandat 3410.062 kb on - strandat 3410.146 kb on - strandat 3410.150 kb on - strandat 3410.197 kb on - strandat 3410.209 kb on - strandat 3410.228 kb on + strandat 3410.229 kb on - strandat 3410.229 kb on - strandat 3410.469 kb on + strand, within IAI46_16265at 3410.470 kb on - strand, within IAI46_16265at 3410.470 kb on - strand, within IAI46_16265at 3410.580 kb on - strand, within IAI46_16265at 3410.580 kb on - strand, within IAI46_16265at 3410.607 kb on + strand, within IAI46_16265at 3410.608 kb on - strand, within IAI46_16265at 3410.608 kb on - strand, within IAI46_16265at 3410.612 kb on - strand, within IAI46_16265at 3410.658 kb on + strand, within IAI46_16265at 3410.659 kb on - strand, within IAI46_16265at 3410.659 kb on - strand, within IAI46_16265at 3410.770 kb on - strand, within IAI46_16265at 3410.770 kb on - strand, within IAI46_16265at 3410.770 kb on - strand, within IAI46_16265at 3410.845 kb on + strand, within IAI46_16265at 3410.868 kb on + strand, within IAI46_16265at 3410.868 kb on + strand, within IAI46_16265at 3410.868 kb on + strand, within IAI46_16265at 3410.869 kb on - strand, within IAI46_16265at 3410.919 kb on + strand, within IAI46_16265at 3410.969 kb on - strand, within IAI46_16265at 3410.980 kb on + strand, within IAI46_16265at 3410.981 kb on - strand, within IAI46_16265at 3410.981 kb on - strand, within IAI46_16265at 3410.985 kb on - strand, within IAI46_16265at 3411.010 kb on - strand, within IAI46_16265

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,408,989 - +0.4
3,408,989 - -0.5
3,408,993 - -0.7
3,409,053 + +0.2
3,409,053 + +0.3
3,409,054 - -0.2
3,409,070 - -1.0
3,409,128 + +0.4
3,409,128 + +0.2
3,409,128 + +0.1
3,409,137 + -0.1
3,409,138 - -0.2
3,409,268 - +0.4
3,409,278 - -0.7
3,409,307 + IAI46_16255 0.11 -0.6
3,409,308 - IAI46_16255 0.12 -1.4
3,409,391 - IAI46_16255 0.52 -0.0
3,409,394 + IAI46_16255 0.54 +0.5
3,409,395 - IAI46_16255 0.54 +0.1
3,409,395 - IAI46_16255 0.54 -0.5
3,409,447 - IAI46_16255 0.80 -0.5
3,409,597 + +1.1
3,409,703 - +1.0
3,409,720 + +0.9
3,409,721 - +0.5
3,409,832 - -0.0
3,409,832 - +0.6
3,409,948 - IAI46_16260 0.55 -2.0
3,410,037 - -0.3
3,410,037 - +0.1
3,410,047 - -0.9
3,410,062 - -1.4
3,410,146 - +0.1
3,410,150 - -0.2
3,410,197 - -0.2
3,410,209 - -0.3
3,410,228 + -0.1
3,410,229 - +0.7
3,410,229 - +0.4
3,410,469 + IAI46_16265 0.16 -0.3
3,410,470 - IAI46_16265 0.16 +0.3
3,410,470 - IAI46_16265 0.16 +0.1
3,410,580 - IAI46_16265 0.29 +0.6
3,410,580 - IAI46_16265 0.29 +0.5
3,410,607 + IAI46_16265 0.32 +0.4
3,410,608 - IAI46_16265 0.32 -0.7
3,410,608 - IAI46_16265 0.32 +1.2
3,410,612 - IAI46_16265 0.33 +1.0
3,410,658 + IAI46_16265 0.38 +1.3
3,410,659 - IAI46_16265 0.38 -0.6
3,410,659 - IAI46_16265 0.38 +1.3
3,410,770 - IAI46_16265 0.51 -0.6
3,410,770 - IAI46_16265 0.51 +0.3
3,410,770 - IAI46_16265 0.51 +0.7
3,410,845 + IAI46_16265 0.60 -1.6
3,410,868 + IAI46_16265 0.62 +0.5
3,410,868 + IAI46_16265 0.62 +0.8
3,410,868 + IAI46_16265 0.62 -1.0
3,410,869 - IAI46_16265 0.63 -0.4
3,410,919 + IAI46_16265 0.68 +0.3
3,410,969 - IAI46_16265 0.74 +0.7
3,410,980 + IAI46_16265 0.75 +0.4
3,410,981 - IAI46_16265 0.75 -1.2
3,410,981 - IAI46_16265 0.75 -0.1
3,410,985 - IAI46_16265 0.76 -1.0
3,411,010 - IAI46_16265 0.79 +1.4

Or see this region's nucleotide sequence