Strain Fitness in Serratia liquefaciens MT49 around IAI46_16180

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_16170 and IAI46_16175 are separated by 5 nucleotidesIAI46_16175 and IAI46_16180 are separated by 21 nucleotidesIAI46_16180 and IAI46_16185 are separated by 67 nucleotidesIAI46_16185 and IAI46_16190 are separated by 252 nucleotidesIAI46_16190 and IAI46_16195 are separated by 80 nucleotides IAI46_16170: IAI46_16170 - 3-oxoadipate enol-lactonase, at 3,390,639 to 3,391,409 _16170 IAI46_16175: IAI46_16175 - glutaredoxin-dependent arsenate reductase, at 3,391,415 to 3,391,846 _16175 IAI46_16180: IAI46_16180 - arsenic transporter, at 3,391,868 to 3,393,157 _16180 IAI46_16185: IAI46_16185 - metalloregulator ArsR/SmtB family transcription factor, at 3,393,225 to 3,393,554 _16185 IAI46_16190: IAI46_16190 - hypothetical protein, at 3,393,807 to 3,393,986 _16190 IAI46_16195: IAI46_16195 - LysR family transcriptional regulator, at 3,394,067 to 3,394,984 _16195 Position (kb) 3391 3392 3393 3394Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3390.872 kb on - strand, within IAI46_16170at 3391.155 kb on + strand, within IAI46_16170at 3391.561 kb on + strand, within IAI46_16175at 3391.562 kb on - strand, within IAI46_16175at 3391.562 kb on - strand, within IAI46_16175at 3391.562 kb on - strand, within IAI46_16175at 3391.571 kb on - strand, within IAI46_16175at 3391.595 kb on - strand, within IAI46_16175at 3391.595 kb on - strand, within IAI46_16175at 3391.651 kb on - strand, within IAI46_16175at 3391.666 kb on + strand, within IAI46_16175at 3391.667 kb on - strand, within IAI46_16175at 3391.840 kb on + strandat 3391.841 kb on - strandat 3391.841 kb on - strandat 3391.957 kb on - strandat 3391.991 kb on + strandat 3391.992 kb on - strandat 3392.086 kb on + strand, within IAI46_16180at 3392.087 kb on - strand, within IAI46_16180at 3392.090 kb on + strand, within IAI46_16180at 3392.198 kb on - strand, within IAI46_16180at 3392.277 kb on + strand, within IAI46_16180at 3392.278 kb on - strand, within IAI46_16180at 3392.289 kb on + strand, within IAI46_16180at 3392.289 kb on + strand, within IAI46_16180at 3392.289 kb on + strand, within IAI46_16180at 3392.289 kb on + strand, within IAI46_16180at 3392.290 kb on - strand, within IAI46_16180at 3392.290 kb on - strand, within IAI46_16180at 3392.290 kb on - strand, within IAI46_16180at 3392.341 kb on + strand, within IAI46_16180at 3392.541 kb on + strand, within IAI46_16180at 3392.541 kb on + strand, within IAI46_16180at 3392.674 kb on + strand, within IAI46_16180at 3392.674 kb on + strand, within IAI46_16180at 3392.674 kb on + strand, within IAI46_16180at 3392.868 kb on + strand, within IAI46_16180at 3392.869 kb on - strand, within IAI46_16180at 3392.869 kb on - strand, within IAI46_16180at 3392.963 kb on - strand, within IAI46_16180at 3393.035 kb on + strandat 3393.138 kb on - strandat 3393.285 kb on - strand, within IAI46_16185at 3393.289 kb on + strand, within IAI46_16185at 3393.289 kb on + strand, within IAI46_16185at 3393.290 kb on - strand, within IAI46_16185at 3393.290 kb on - strand, within IAI46_16185at 3393.462 kb on + strand, within IAI46_16185at 3393.463 kb on - strand, within IAI46_16185at 3393.463 kb on - strand, within IAI46_16185at 3393.587 kb on - strandat 3393.620 kb on - strandat 3393.627 kb on - strandat 3393.721 kb on - strandat 3393.732 kb on - strandat 3393.753 kb on - strandat 3393.753 kb on - strandat 3393.795 kb on + strandat 3393.806 kb on + strandat 3393.806 kb on + strandat 3393.806 kb on + strandat 3393.807 kb on - strandat 3393.811 kb on - strandat 3393.852 kb on + strand, within IAI46_16190at 3393.853 kb on - strand, within IAI46_16190at 3393.985 kb on - strandat 3393.999 kb on + strandat 3394.022 kb on - strandat 3394.025 kb on + strandat 3394.025 kb on + strandat 3394.025 kb on + strandat 3394.025 kb on + strandat 3394.026 kb on - strandat 3394.037 kb on + strandat 3394.038 kb on - strandat 3394.065 kb on + strandat 3394.155 kb on + strandat 3394.155 kb on + strandat 3394.156 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,390,872 - IAI46_16170 0.30 +0.8
3,391,155 + IAI46_16170 0.67 +0.8
3,391,561 + IAI46_16175 0.34 +0.8
3,391,562 - IAI46_16175 0.34 +0.2
3,391,562 - IAI46_16175 0.34 -0.2
3,391,562 - IAI46_16175 0.34 -0.3
3,391,571 - IAI46_16175 0.36 +0.2
3,391,595 - IAI46_16175 0.42 +0.2
3,391,595 - IAI46_16175 0.42 +0.4
3,391,651 - IAI46_16175 0.55 -0.5
3,391,666 + IAI46_16175 0.58 -1.1
3,391,667 - IAI46_16175 0.58 -0.3
3,391,840 + +0.5
3,391,841 - +0.5
3,391,841 - +0.6
3,391,957 - +0.0
3,391,991 + -0.2
3,391,992 - +0.4
3,392,086 + IAI46_16180 0.17 -0.7
3,392,087 - IAI46_16180 0.17 +0.6
3,392,090 + IAI46_16180 0.17 +0.5
3,392,198 - IAI46_16180 0.26 +0.2
3,392,277 + IAI46_16180 0.32 +0.7
3,392,278 - IAI46_16180 0.32 -0.8
3,392,289 + IAI46_16180 0.33 +1.1
3,392,289 + IAI46_16180 0.33 -1.3
3,392,289 + IAI46_16180 0.33 +0.7
3,392,289 + IAI46_16180 0.33 -0.2
3,392,290 - IAI46_16180 0.33 +0.1
3,392,290 - IAI46_16180 0.33 +0.8
3,392,290 - IAI46_16180 0.33 +1.4
3,392,341 + IAI46_16180 0.37 -2.9
3,392,541 + IAI46_16180 0.52 +0.4
3,392,541 + IAI46_16180 0.52 +1.0
3,392,674 + IAI46_16180 0.62 -0.4
3,392,674 + IAI46_16180 0.62 -0.2
3,392,674 + IAI46_16180 0.62 +0.8
3,392,868 + IAI46_16180 0.78 -0.2
3,392,869 - IAI46_16180 0.78 +0.4
3,392,869 - IAI46_16180 0.78 +0.2
3,392,963 - IAI46_16180 0.85 +0.4
3,393,035 + +0.1
3,393,138 - -0.5
3,393,285 - IAI46_16185 0.18 +1.4
3,393,289 + IAI46_16185 0.19 +0.7
3,393,289 + IAI46_16185 0.19 -0.3
3,393,290 - IAI46_16185 0.20 +0.1
3,393,290 - IAI46_16185 0.20 +1.1
3,393,462 + IAI46_16185 0.72 +0.1
3,393,463 - IAI46_16185 0.72 -0.4
3,393,463 - IAI46_16185 0.72 +0.7
3,393,587 - -0.2
3,393,620 - -1.4
3,393,627 - +1.2
3,393,721 - -0.1
3,393,732 - +0.9
3,393,753 - +0.1
3,393,753 - +1.5
3,393,795 + +1.9
3,393,806 + +0.7
3,393,806 + +0.2
3,393,806 + +0.4
3,393,807 - +0.4
3,393,811 - +1.6
3,393,852 + IAI46_16190 0.25 +0.4
3,393,853 - IAI46_16190 0.26 +0.5
3,393,985 - +0.9
3,393,999 + -1.4
3,394,022 - -0.7
3,394,025 + +0.2
3,394,025 + -0.3
3,394,025 + -0.2
3,394,025 + -0.6
3,394,026 - -0.2
3,394,037 + +0.4
3,394,038 - -0.2
3,394,065 + -0.5
3,394,155 + +0.4
3,394,155 + +1.0
3,394,156 - -0.8

Or see this region's nucleotide sequence