Strain Fitness in Serratia liquefaciens MT49 around IAI46_14450

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_14440 and IAI46_14445 are separated by 62 nucleotidesIAI46_14445 and IAI46_14450 are separated by 109 nucleotidesIAI46_14450 and IAI46_14455 are separated by 3 nucleotides IAI46_14440: IAI46_14440 - ABC transporter permease subunit, at 3,062,402 to 3,064,120 _14440 IAI46_14445: IAI46_14445 - 3'-5' exoribonuclease, at 3,064,183 to 3,064,743 _14445 IAI46_14450: IAI46_14450 - multidrug effflux MFS transporter, at 3,064,853 to 3,066,046 _14450 IAI46_14455: IAI46_14455 - catabolic alanine racemase DadX, at 3,066,050 to 3,067,123 _14455 Position (kb) 3064 3065 3066 3067Strain fitness (log2 ratio) -1 0 1at 3063.860 kb on + strand, within IAI46_14440at 3064.144 kb on - strandat 3064.147 kb on - strandat 3064.158 kb on + strandat 3064.220 kb on + strandat 3064.512 kb on + strand, within IAI46_14445at 3064.690 kb on + strandat 3064.928 kb on - strandat 3065.045 kb on + strand, within IAI46_14450at 3065.085 kb on - strand, within IAI46_14450at 3065.343 kb on + strand, within IAI46_14450at 3065.344 kb on - strand, within IAI46_14450at 3065.344 kb on - strand, within IAI46_14450at 3065.344 kb on - strand, within IAI46_14450at 3065.348 kb on + strand, within IAI46_14450at 3065.348 kb on + strand, within IAI46_14450at 3065.348 kb on + strand, within IAI46_14450at 3065.348 kb on + strand, within IAI46_14450at 3065.349 kb on - strand, within IAI46_14450at 3065.379 kb on + strand, within IAI46_14450at 3065.520 kb on - strand, within IAI46_14450at 3065.706 kb on + strand, within IAI46_14450at 3065.706 kb on + strand, within IAI46_14450at 3065.707 kb on - strand, within IAI46_14450at 3065.766 kb on - strand, within IAI46_14450at 3065.767 kb on + strand, within IAI46_14450at 3065.768 kb on - strand, within IAI46_14450at 3065.768 kb on - strand, within IAI46_14450at 3065.973 kb on + strandat 3066.321 kb on - strand, within IAI46_14455at 3066.430 kb on + strand, within IAI46_14455at 3066.486 kb on + strand, within IAI46_14455at 3066.486 kb on + strand, within IAI46_14455at 3066.494 kb on + strand, within IAI46_14455at 3066.495 kb on - strand, within IAI46_14455at 3066.495 kb on - strand, within IAI46_14455at 3066.495 kb on - strand, within IAI46_14455at 3066.574 kb on + strand, within IAI46_14455at 3066.575 kb on - strand, within IAI46_14455at 3066.656 kb on + strand, within IAI46_14455at 3066.673 kb on + strand, within IAI46_14455at 3066.680 kb on + strand, within IAI46_14455at 3066.681 kb on - strand, within IAI46_14455at 3066.681 kb on - strand, within IAI46_14455at 3066.928 kb on + strand, within IAI46_14455at 3066.929 kb on - strand, within IAI46_14455at 3066.995 kb on - strand, within IAI46_14455at 3067.009 kb on - strand, within IAI46_14455

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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3,063,860 + IAI46_14440 0.85 -0.2
3,064,144 - +0.6
3,064,147 - +0.8
3,064,158 + +1.3
3,064,220 + +1.0
3,064,512 + IAI46_14445 0.59 -0.3
3,064,690 + +1.3
3,064,928 - +0.0
3,065,045 + IAI46_14450 0.16 +0.6
3,065,085 - IAI46_14450 0.19 -0.2
3,065,343 + IAI46_14450 0.41 -0.4
3,065,344 - IAI46_14450 0.41 +0.3
3,065,344 - IAI46_14450 0.41 +0.1
3,065,344 - IAI46_14450 0.41 -0.6
3,065,348 + IAI46_14450 0.41 +0.3
3,065,348 + IAI46_14450 0.41 +0.4
3,065,348 + IAI46_14450 0.41 -0.8
3,065,348 + IAI46_14450 0.41 -0.2
3,065,349 - IAI46_14450 0.42 +0.7
3,065,379 + IAI46_14450 0.44 +0.8
3,065,520 - IAI46_14450 0.56 +1.5
3,065,706 + IAI46_14450 0.71 +0.1
3,065,706 + IAI46_14450 0.71 +0.8
3,065,707 - IAI46_14450 0.72 -0.8
3,065,766 - IAI46_14450 0.76 +0.3
3,065,767 + IAI46_14450 0.77 +0.3
3,065,768 - IAI46_14450 0.77 -0.1
3,065,768 - IAI46_14450 0.77 -0.2
3,065,973 + +0.5
3,066,321 - IAI46_14455 0.25 +0.3
3,066,430 + IAI46_14455 0.35 +0.9
3,066,486 + IAI46_14455 0.41 +0.0
3,066,486 + IAI46_14455 0.41 -0.3
3,066,494 + IAI46_14455 0.41 +1.6
3,066,495 - IAI46_14455 0.41 -0.2
3,066,495 - IAI46_14455 0.41 -0.3
3,066,495 - IAI46_14455 0.41 +0.1
3,066,574 + IAI46_14455 0.49 -0.1
3,066,575 - IAI46_14455 0.49 -0.0
3,066,656 + IAI46_14455 0.56 -0.2
3,066,673 + IAI46_14455 0.58 -0.8
3,066,680 + IAI46_14455 0.59 -0.4
3,066,681 - IAI46_14455 0.59 +0.5
3,066,681 - IAI46_14455 0.59 -0.4
3,066,928 + IAI46_14455 0.82 -0.4
3,066,929 - IAI46_14455 0.82 +0.1
3,066,995 - IAI46_14455 0.88 +0.0
3,067,009 - IAI46_14455 0.89 +0.3

Or see this region's nucleotide sequence