Strain Fitness in Serratia liquefaciens MT49 around IAI46_13910

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13900 and IAI46_13905 are separated by 352 nucleotidesIAI46_13905 and IAI46_13910 are separated by 207 nucleotidesIAI46_13910 and IAI46_13915 are separated by 10 nucleotides IAI46_13900: IAI46_13900 - L-ribulose-5-phosphate 4-epimerase, at 2,954,162 to 2,954,857 _13900 IAI46_13905: IAI46_13905 - osmotically-inducible lipoprotein OsmB, at 2,955,210 to 2,955,428 _13905 IAI46_13910: IAI46_13910 - stress response translation initiation inhibitor YciH, at 2,955,636 to 2,955,962 _13910 IAI46_13915: IAI46_13915 - orotidine-5'-phosphate decarboxylase, at 2,955,973 to 2,956,701 _13915 Position (kb) 2955 2956Strain fitness (log2 ratio) -2 -1 0 1at 2954.716 kb on - strand, within IAI46_13900at 2954.832 kb on - strandat 2954.851 kb on + strandat 2954.852 kb on - strandat 2954.916 kb on - strandat 2954.980 kb on + strandat 2954.984 kb on + strandat 2955.001 kb on + strandat 2955.040 kb on - strandat 2955.040 kb on - strandat 2955.163 kb on - strandat 2955.164 kb on + strandat 2955.164 kb on + strandat 2955.165 kb on - strandat 2955.168 kb on + strandat 2955.168 kb on + strandat 2955.168 kb on + strandat 2955.209 kb on + strandat 2955.224 kb on + strandat 2955.423 kb on - strandat 2955.426 kb on + strandat 2955.492 kb on + strandat 2955.493 kb on - strandat 2955.504 kb on + strandat 2955.527 kb on + strandat 2955.597 kb on + strandat 2955.598 kb on - strandat 2955.915 kb on - strand, within IAI46_13910at 2955.915 kb on - strand, within IAI46_13910at 2955.934 kb on + strandat 2955.934 kb on + strandat 2955.935 kb on - strandat 2956.052 kb on + strand, within IAI46_13915at 2956.052 kb on + strand, within IAI46_13915at 2956.052 kb on + strand, within IAI46_13915at 2956.053 kb on - strand, within IAI46_13915at 2956.053 kb on - strand, within IAI46_13915at 2956.053 kb on - strand, within IAI46_13915at 2956.634 kb on + strandat 2956.729 kb on - strandat 2956.732 kb on + strandat 2956.732 kb on + strandat 2956.767 kb on - strandat 2956.816 kb on - strandat 2956.832 kb on - strandat 2956.832 kb on - strandat 2956.880 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,954,716 - IAI46_13900 0.80 -0.1
2,954,832 - -0.2
2,954,851 + +0.2
2,954,852 - +0.6
2,954,916 - +0.3
2,954,980 + -0.5
2,954,984 + +0.1
2,955,001 + -0.5
2,955,040 - +0.5
2,955,040 - +0.4
2,955,163 - -0.2
2,955,164 + +0.5
2,955,164 + -0.5
2,955,165 - -0.4
2,955,168 + -0.2
2,955,168 + -0.9
2,955,168 + +0.1
2,955,209 + -0.8
2,955,224 + +0.5
2,955,423 - +0.6
2,955,426 + -0.6
2,955,492 + +1.1
2,955,493 - +0.1
2,955,504 + -1.4
2,955,527 + -0.0
2,955,597 + +0.3
2,955,598 - +1.6
2,955,915 - IAI46_13910 0.85 +0.8
2,955,915 - IAI46_13910 0.85 -0.3
2,955,934 + -0.5
2,955,934 + +0.4
2,955,935 - -0.1
2,956,052 + IAI46_13915 0.11 -1.7
2,956,052 + IAI46_13915 0.11 -1.3
2,956,052 + IAI46_13915 0.11 -0.1
2,956,053 - IAI46_13915 0.11 -2.0
2,956,053 - IAI46_13915 0.11 -1.6
2,956,053 - IAI46_13915 0.11 -1.4
2,956,634 + +0.3
2,956,729 - -0.7
2,956,732 + -0.8
2,956,732 + -0.8
2,956,767 - -0.4
2,956,816 - -1.2
2,956,832 - +0.8
2,956,832 - -0.1
2,956,880 + -1.0

Or see this region's nucleotide sequence