Strain Fitness in Serratia liquefaciens MT49 around IAI46_13380

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_13375 and IAI46_13380 are separated by 217 nucleotidesIAI46_13380 and IAI46_13385 overlap by 1 nucleotides IAI46_13375: IAI46_13375 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 2,853,878 to 2,857,411 _13375 IAI46_13380: IAI46_13380 - efflux RND transporter periplasmic adaptor subunit, at 2,857,629 to 2,858,783 _13380 IAI46_13385: IAI46_13385 - efflux RND transporter permease subunit, at 2,858,783 to 2,861,968 _13385 Position (kb) 2857 2858 2859Strain fitness (log2 ratio) -3 -2 -1 0 1at 2856.738 kb on - strand, within IAI46_13375at 2856.748 kb on + strand, within IAI46_13375at 2856.785 kb on + strand, within IAI46_13375at 2856.785 kb on + strand, within IAI46_13375at 2856.785 kb on + strand, within IAI46_13375at 2856.786 kb on - strand, within IAI46_13375at 2856.980 kb on + strand, within IAI46_13375at 2856.993 kb on - strand, within IAI46_13375at 2856.993 kb on - strand, within IAI46_13375at 2857.112 kb on + strandat 2857.174 kb on - strandat 2857.325 kb on + strandat 2857.463 kb on + strandat 2857.501 kb on - strandat 2857.552 kb on + strandat 2857.552 kb on + strandat 2857.561 kb on + strandat 2857.651 kb on + strandat 2857.651 kb on + strandat 2857.652 kb on - strandat 2857.738 kb on + strandat 2857.739 kb on - strandat 2857.995 kb on + strand, within IAI46_13380at 2858.199 kb on + strand, within IAI46_13380at 2858.200 kb on - strand, within IAI46_13380at 2858.259 kb on + strand, within IAI46_13380at 2858.283 kb on + strand, within IAI46_13380at 2858.283 kb on + strand, within IAI46_13380at 2858.283 kb on + strand, within IAI46_13380at 2858.284 kb on - strand, within IAI46_13380at 2858.284 kb on - strand, within IAI46_13380at 2858.524 kb on + strand, within IAI46_13380at 2858.699 kb on - strandat 2858.817 kb on + strandat 2859.017 kb on + strandat 2859.017 kb on + strandat 2859.018 kb on - strandat 2859.142 kb on - strand, within IAI46_13385at 2859.205 kb on - strand, within IAI46_13385at 2859.233 kb on + strand, within IAI46_13385at 2859.258 kb on - strand, within IAI46_13385at 2859.335 kb on + strand, within IAI46_13385at 2859.411 kb on + strand, within IAI46_13385at 2859.533 kb on - strand, within IAI46_13385at 2859.698 kb on - strand, within IAI46_13385at 2859.768 kb on - strand, within IAI46_13385at 2859.768 kb on - strand, within IAI46_13385at 2859.768 kb on - strand, within IAI46_13385

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,856,738 - IAI46_13375 0.81 -0.1
2,856,748 + IAI46_13375 0.81 -0.5
2,856,785 + IAI46_13375 0.82 +0.6
2,856,785 + IAI46_13375 0.82 +0.8
2,856,785 + IAI46_13375 0.82 +0.9
2,856,786 - IAI46_13375 0.82 -1.0
2,856,980 + IAI46_13375 0.88 +0.5
2,856,993 - IAI46_13375 0.88 +0.0
2,856,993 - IAI46_13375 0.88 +0.9
2,857,112 + +0.6
2,857,174 - +0.1
2,857,325 + -0.2
2,857,463 + -0.0
2,857,501 - +0.9
2,857,552 + -1.1
2,857,552 + +0.6
2,857,561 + +1.0
2,857,651 + +1.3
2,857,651 + -0.7
2,857,652 - +1.6
2,857,738 + +0.2
2,857,739 - +0.5
2,857,995 + IAI46_13380 0.32 -0.1
2,858,199 + IAI46_13380 0.49 +0.5
2,858,200 - IAI46_13380 0.49 +0.1
2,858,259 + IAI46_13380 0.55 +0.7
2,858,283 + IAI46_13380 0.57 +0.5
2,858,283 + IAI46_13380 0.57 -1.6
2,858,283 + IAI46_13380 0.57 -0.1
2,858,284 - IAI46_13380 0.57 -1.4
2,858,284 - IAI46_13380 0.57 -2.8
2,858,524 + IAI46_13380 0.77 +0.2
2,858,699 - -0.5
2,858,817 + -0.6
2,859,017 + +0.0
2,859,017 + -0.7
2,859,018 - -0.4
2,859,142 - IAI46_13385 0.11 -0.6
2,859,205 - IAI46_13385 0.13 +0.3
2,859,233 + IAI46_13385 0.14 -0.8
2,859,258 - IAI46_13385 0.15 -1.3
2,859,335 + IAI46_13385 0.17 -0.6
2,859,411 + IAI46_13385 0.20 +0.5
2,859,533 - IAI46_13385 0.24 -0.8
2,859,698 - IAI46_13385 0.29 -0.4
2,859,768 - IAI46_13385 0.31 -0.8
2,859,768 - IAI46_13385 0.31 +0.5
2,859,768 - IAI46_13385 0.31 -0.3

Or see this region's nucleotide sequence