Strain Fitness in Serratia liquefaciens MT49 around IAI46_13170

Experiment: dichromate 20 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_13160 and IAI46_13165 overlap by 4 nucleotidesIAI46_13165 and IAI46_13170 are separated by 3 nucleotidesIAI46_13170 and IAI46_13175 are separated by 41 nucleotidesIAI46_13175 and IAI46_13180 are separated by 73 nucleotides IAI46_13160: IAI46_13160 - hypothetical protein, at 2,807,684 to 2,807,941 _13160 IAI46_13165: IAI46_13165 - glutamine amidotransferase, at 2,807,938 to 2,808,651 _13165 IAI46_13170: IAI46_13170 - pyridoxal kinase, at 2,808,655 to 2,809,494 _13170 IAI46_13175: IAI46_13175 - flagellar brake protein, at 2,809,536 to 2,810,249 _13175 IAI46_13180: IAI46_13180 - N-formylglutamate amidohydrolase, at 2,810,323 to 2,811,105 _13180 Position (kb) 2808 2809 2810Strain fitness (log2 ratio) -2 -1 0 1at 2807.700 kb on + strandat 2807.711 kb on - strand, within IAI46_13160at 2807.711 kb on - strand, within IAI46_13160at 2807.711 kb on - strand, within IAI46_13160at 2807.821 kb on + strand, within IAI46_13160at 2807.822 kb on - strand, within IAI46_13160at 2807.847 kb on + strand, within IAI46_13160at 2807.848 kb on - strand, within IAI46_13160at 2807.891 kb on - strand, within IAI46_13160at 2808.142 kb on + strand, within IAI46_13165at 2808.165 kb on - strand, within IAI46_13165at 2808.287 kb on - strand, within IAI46_13165at 2808.369 kb on + strand, within IAI46_13165at 2808.376 kb on - strand, within IAI46_13165at 2808.415 kb on - strand, within IAI46_13165at 2808.612 kb on - strandat 2808.652 kb on + strandat 2808.721 kb on + strandat 2808.722 kb on - strandat 2808.722 kb on - strandat 2808.817 kb on + strand, within IAI46_13170at 2808.818 kb on - strand, within IAI46_13170at 2808.820 kb on + strand, within IAI46_13170at 2808.821 kb on - strand, within IAI46_13170at 2808.972 kb on - strand, within IAI46_13170at 2809.010 kb on - strand, within IAI46_13170at 2809.011 kb on + strand, within IAI46_13170at 2809.048 kb on + strand, within IAI46_13170at 2809.048 kb on + strand, within IAI46_13170at 2809.049 kb on - strand, within IAI46_13170at 2809.302 kb on + strand, within IAI46_13170at 2809.846 kb on + strand, within IAI46_13175at 2809.865 kb on - strand, within IAI46_13175at 2810.050 kb on + strand, within IAI46_13175at 2810.050 kb on + strand, within IAI46_13175at 2810.223 kb on - strandat 2810.435 kb on + strand, within IAI46_13180at 2810.474 kb on + strand, within IAI46_13180at 2810.475 kb on - strand, within IAI46_13180at 2810.475 kb on - strand, within IAI46_13180

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
remove
2,807,700 + +0.2
2,807,711 - IAI46_13160 0.10 -0.4
2,807,711 - IAI46_13160 0.10 -0.4
2,807,711 - IAI46_13160 0.10 -1.2
2,807,821 + IAI46_13160 0.53 +0.7
2,807,822 - IAI46_13160 0.53 +0.4
2,807,847 + IAI46_13160 0.63 -0.3
2,807,848 - IAI46_13160 0.64 +0.3
2,807,891 - IAI46_13160 0.80 +0.2
2,808,142 + IAI46_13165 0.29 -0.1
2,808,165 - IAI46_13165 0.32 +0.4
2,808,287 - IAI46_13165 0.49 +0.2
2,808,369 + IAI46_13165 0.60 +0.5
2,808,376 - IAI46_13165 0.61 +0.7
2,808,415 - IAI46_13165 0.67 -2.2
2,808,612 - -0.9
2,808,652 + -1.2
2,808,721 + -0.7
2,808,722 - -0.8
2,808,722 - -0.8
2,808,817 + IAI46_13170 0.19 +1.0
2,808,818 - IAI46_13170 0.19 -1.7
2,808,820 + IAI46_13170 0.20 +1.4
2,808,821 - IAI46_13170 0.20 +0.4
2,808,972 - IAI46_13170 0.38 +1.2
2,809,010 - IAI46_13170 0.42 -0.2
2,809,011 + IAI46_13170 0.42 +0.1
2,809,048 + IAI46_13170 0.47 -0.1
2,809,048 + IAI46_13170 0.47 +0.3
2,809,049 - IAI46_13170 0.47 +1.0
2,809,302 + IAI46_13170 0.77 -0.6
2,809,846 + IAI46_13175 0.43 -0.2
2,809,865 - IAI46_13175 0.46 -0.1
2,810,050 + IAI46_13175 0.72 -1.5
2,810,050 + IAI46_13175 0.72 +0.0
2,810,223 - +0.2
2,810,435 + IAI46_13180 0.14 +1.3
2,810,474 + IAI46_13180 0.19 +0.5
2,810,475 - IAI46_13180 0.19 -1.0
2,810,475 - IAI46_13180 0.19 +0.1

Or see this region's nucleotide sequence