Strain Fitness in Serratia liquefaciens MT49 around IAI46_12435

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_12425 and IAI46_12430 are separated by 8 nucleotidesIAI46_12430 and IAI46_12435 overlap by 11 nucleotidesIAI46_12435 and IAI46_12440 are separated by 24 nucleotidesIAI46_12440 and IAI46_12445 overlap by 8 nucleotides IAI46_12425: IAI46_12425 - LysR family transcriptional regulator, at 2,640,681 to 2,641,607 _12425 IAI46_12430: IAI46_12430 - hypothetical protein, at 2,641,616 to 2,641,813 _12430 IAI46_12435: IAI46_12435 - FAD-dependent monooxygenase, at 2,641,803 to 2,643,515 _12435 IAI46_12440: IAI46_12440 - polysaccharide deacetylase family protein, at 2,643,540 to 2,644,196 _12440 IAI46_12445: IAI46_12445 - GMC family oxidoreductase N-terminal domain-containing protein, at 2,644,189 to 2,645,811 _12445 Position (kb) 2641 2642 2643 2644Strain fitness (log2 ratio) -1 0 1at 2640.918 kb on + strand, within IAI46_12425at 2640.918 kb on + strand, within IAI46_12425at 2640.919 kb on - strand, within IAI46_12425at 2641.154 kb on - strand, within IAI46_12425at 2641.163 kb on - strand, within IAI46_12425at 2641.163 kb on - strand, within IAI46_12425at 2641.477 kb on - strand, within IAI46_12425at 2641.500 kb on + strand, within IAI46_12425at 2641.617 kb on + strandat 2641.618 kb on - strandat 2641.652 kb on + strand, within IAI46_12430at 2641.761 kb on + strand, within IAI46_12430at 2641.773 kb on + strand, within IAI46_12430at 2641.774 kb on - strand, within IAI46_12430at 2641.804 kb on + strandat 2641.940 kb on - strandat 2642.211 kb on + strand, within IAI46_12435at 2642.212 kb on - strand, within IAI46_12435at 2642.340 kb on - strand, within IAI46_12435at 2642.452 kb on - strand, within IAI46_12435at 2642.505 kb on - strand, within IAI46_12435at 2642.506 kb on + strand, within IAI46_12435at 2642.507 kb on - strand, within IAI46_12435at 2642.507 kb on - strand, within IAI46_12435at 2642.600 kb on - strand, within IAI46_12435at 2642.630 kb on - strand, within IAI46_12435at 2642.630 kb on - strand, within IAI46_12435at 2642.872 kb on - strand, within IAI46_12435at 2642.872 kb on - strand, within IAI46_12435at 2643.116 kb on + strand, within IAI46_12435at 2643.118 kb on + strand, within IAI46_12435at 2643.119 kb on - strand, within IAI46_12435at 2643.119 kb on - strand, within IAI46_12435at 2643.321 kb on + strand, within IAI46_12435at 2643.322 kb on - strand, within IAI46_12435at 2643.472 kb on + strandat 2643.473 kb on - strandat 2643.919 kb on + strand, within IAI46_12440at 2643.920 kb on - strand, within IAI46_12440at 2644.047 kb on - strand, within IAI46_12440at 2644.255 kb on - strandat 2644.269 kb on + strandat 2644.403 kb on + strand, within IAI46_12445

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,640,918 + IAI46_12425 0.26 -1.0
2,640,918 + IAI46_12425 0.26 -0.2
2,640,919 - IAI46_12425 0.26 +0.8
2,641,154 - IAI46_12425 0.51 +0.3
2,641,163 - IAI46_12425 0.52 +0.4
2,641,163 - IAI46_12425 0.52 +0.8
2,641,477 - IAI46_12425 0.86 +0.3
2,641,500 + IAI46_12425 0.88 +0.4
2,641,617 + +1.4
2,641,618 - +1.2
2,641,652 + IAI46_12430 0.18 +1.2
2,641,761 + IAI46_12430 0.73 +0.8
2,641,773 + IAI46_12430 0.79 +0.2
2,641,774 - IAI46_12430 0.80 +0.2
2,641,804 + +0.4
2,641,940 - +0.8
2,642,211 + IAI46_12435 0.24 -0.2
2,642,212 - IAI46_12435 0.24 -0.4
2,642,340 - IAI46_12435 0.31 -1.4
2,642,452 - IAI46_12435 0.38 +1.4
2,642,505 - IAI46_12435 0.41 +0.8
2,642,506 + IAI46_12435 0.41 +0.2
2,642,507 - IAI46_12435 0.41 +0.4
2,642,507 - IAI46_12435 0.41 -1.6
2,642,600 - IAI46_12435 0.47 -0.2
2,642,630 - IAI46_12435 0.48 +0.4
2,642,630 - IAI46_12435 0.48 +0.6
2,642,872 - IAI46_12435 0.62 +0.2
2,642,872 - IAI46_12435 0.62 +0.4
2,643,116 + IAI46_12435 0.77 +0.3
2,643,118 + IAI46_12435 0.77 -0.1
2,643,119 - IAI46_12435 0.77 +0.1
2,643,119 - IAI46_12435 0.77 -1.0
2,643,321 + IAI46_12435 0.89 +1.2
2,643,322 - IAI46_12435 0.89 +0.1
2,643,472 + +0.1
2,643,473 - +0.2
2,643,919 + IAI46_12440 0.58 +0.9
2,643,920 - IAI46_12440 0.58 +0.2
2,644,047 - IAI46_12440 0.77 -0.1
2,644,255 - +0.5
2,644,269 + -0.5
2,644,403 + IAI46_12445 0.13 -0.3

Or see this region's nucleotide sequence