Strain Fitness in Serratia liquefaciens MT49 around IAI46_11975

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_11970 and IAI46_11975 are separated by 277 nucleotidesIAI46_11975 and IAI46_11980 are separated by 177 nucleotides IAI46_11970: IAI46_11970 - cytochrome c, at 2,534,783 to 2,536,018 _11970 IAI46_11975: IAI46_11975 - DMT family transporter, at 2,536,296 to 2,537,201 _11975 IAI46_11980: IAI46_11980 - helix-turn-helix transcriptional regulator, at 2,537,379 to 2,538,248 _11980 Position (kb) 2536 2537 2538Strain fitness (log2 ratio) -2 -1 0 1at 2535.313 kb on - strand, within IAI46_11970at 2535.347 kb on - strand, within IAI46_11970at 2535.374 kb on - strand, within IAI46_11970at 2535.374 kb on - strand, within IAI46_11970at 2535.543 kb on + strand, within IAI46_11970at 2535.575 kb on - strand, within IAI46_11970at 2535.675 kb on + strand, within IAI46_11970at 2535.675 kb on + strand, within IAI46_11970at 2535.675 kb on + strand, within IAI46_11970at 2535.676 kb on - strand, within IAI46_11970at 2535.712 kb on - strand, within IAI46_11970at 2536.052 kb on - strandat 2536.120 kb on - strandat 2536.291 kb on + strandat 2536.292 kb on - strandat 2536.292 kb on - strandat 2536.417 kb on + strand, within IAI46_11975at 2536.507 kb on + strand, within IAI46_11975at 2536.636 kb on + strand, within IAI46_11975at 2536.648 kb on + strand, within IAI46_11975at 2536.648 kb on + strand, within IAI46_11975at 2536.648 kb on + strand, within IAI46_11975at 2536.649 kb on - strand, within IAI46_11975at 2536.653 kb on - strand, within IAI46_11975at 2536.653 kb on - strand, within IAI46_11975at 2536.724 kb on - strand, within IAI46_11975at 2536.875 kb on - strand, within IAI46_11975at 2536.943 kb on - strand, within IAI46_11975at 2536.943 kb on - strand, within IAI46_11975at 2536.958 kb on - strand, within IAI46_11975at 2537.031 kb on - strand, within IAI46_11975at 2537.073 kb on + strand, within IAI46_11975at 2537.186 kb on - strandat 2537.186 kb on - strandat 2537.186 kb on - strandat 2537.202 kb on - strandat 2537.326 kb on - strandat 2537.389 kb on - strandat 2537.389 kb on - strandat 2537.417 kb on + strandat 2537.417 kb on + strandat 2537.493 kb on - strand, within IAI46_11980at 2537.519 kb on + strand, within IAI46_11980at 2537.520 kb on - strand, within IAI46_11980at 2537.556 kb on + strand, within IAI46_11980at 2537.674 kb on - strand, within IAI46_11980at 2537.678 kb on + strand, within IAI46_11980at 2537.679 kb on - strand, within IAI46_11980at 2537.993 kb on - strand, within IAI46_11980

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,535,313 - IAI46_11970 0.43 +0.2
2,535,347 - IAI46_11970 0.46 +1.4
2,535,374 - IAI46_11970 0.48 +0.4
2,535,374 - IAI46_11970 0.48 +0.3
2,535,543 + IAI46_11970 0.61 +0.3
2,535,575 - IAI46_11970 0.64 -0.5
2,535,675 + IAI46_11970 0.72 +0.8
2,535,675 + IAI46_11970 0.72 +0.5
2,535,675 + IAI46_11970 0.72 +0.3
2,535,676 - IAI46_11970 0.72 +0.5
2,535,712 - IAI46_11970 0.75 -1.1
2,536,052 - -0.3
2,536,120 - -0.1
2,536,291 + +0.6
2,536,292 - +0.2
2,536,292 - +0.6
2,536,417 + IAI46_11975 0.13 +0.8
2,536,507 + IAI46_11975 0.23 -0.1
2,536,636 + IAI46_11975 0.38 -0.6
2,536,648 + IAI46_11975 0.39 +1.7
2,536,648 + IAI46_11975 0.39 -0.1
2,536,648 + IAI46_11975 0.39 -0.4
2,536,649 - IAI46_11975 0.39 +0.9
2,536,653 - IAI46_11975 0.39 -0.1
2,536,653 - IAI46_11975 0.39 -2.4
2,536,724 - IAI46_11975 0.47 +0.2
2,536,875 - IAI46_11975 0.64 +0.6
2,536,943 - IAI46_11975 0.71 -0.3
2,536,943 - IAI46_11975 0.71 +0.0
2,536,958 - IAI46_11975 0.73 -0.8
2,537,031 - IAI46_11975 0.81 +0.2
2,537,073 + IAI46_11975 0.86 +0.3
2,537,186 - +0.4
2,537,186 - +0.8
2,537,186 - +0.6
2,537,202 - +0.7
2,537,326 - +1.2
2,537,389 - +0.4
2,537,389 - -1.2
2,537,417 + +0.2
2,537,417 + +0.4
2,537,493 - IAI46_11980 0.13 -0.1
2,537,519 + IAI46_11980 0.16 +0.2
2,537,520 - IAI46_11980 0.16 -0.3
2,537,556 + IAI46_11980 0.20 +0.6
2,537,674 - IAI46_11980 0.34 +0.2
2,537,678 + IAI46_11980 0.34 +0.8
2,537,679 - IAI46_11980 0.34 -1.4
2,537,993 - IAI46_11980 0.71 +0.2

Or see this region's nucleotide sequence