Strain Fitness in Serratia liquefaciens MT49 around IAI46_11855

Experiment: dichromate 20 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_11850 and IAI46_11855 are separated by 111 nucleotidesIAI46_11855 and IAI46_11860 are separated by 766 nucleotides IAI46_11850: IAI46_11850 - LysR family transcriptional regulator, at 2,505,742 to 2,506,623 _11850 IAI46_11855: IAI46_11855 - sulfite exporter TauE/SafE family protein, at 2,506,735 to 2,507,481 _11855 IAI46_11860: IAI46_11860 - HlyD family efflux transporter periplasmic adaptor subunit, at 2,508,248 to 2,509,516 _11860 Position (kb) 2506 2507 2508Strain fitness (log2 ratio) -2 -1 0 1 2at 2505.808 kb on + strandat 2505.808 kb on + strandat 2505.809 kb on - strandat 2505.809 kb on - strandat 2505.967 kb on + strand, within IAI46_11850at 2506.045 kb on - strand, within IAI46_11850at 2506.052 kb on + strand, within IAI46_11850at 2506.053 kb on - strand, within IAI46_11850at 2506.053 kb on - strand, within IAI46_11850at 2506.053 kb on - strand, within IAI46_11850at 2506.145 kb on + strand, within IAI46_11850at 2506.280 kb on + strand, within IAI46_11850at 2506.281 kb on - strand, within IAI46_11850at 2506.402 kb on + strand, within IAI46_11850at 2506.403 kb on - strand, within IAI46_11850at 2506.634 kb on + strandat 2506.634 kb on + strandat 2506.634 kb on + strandat 2506.728 kb on + strandat 2506.728 kb on + strandat 2506.734 kb on + strandat 2506.735 kb on - strandat 2506.735 kb on - strandat 2506.735 kb on - strandat 2506.735 kb on - strandat 2506.779 kb on + strandat 2507.068 kb on + strand, within IAI46_11855at 2507.147 kb on + strand, within IAI46_11855at 2507.203 kb on + strand, within IAI46_11855at 2507.692 kb on + strandat 2507.895 kb on + strandat 2507.899 kb on + strandat 2508.154 kb on + strandat 2508.158 kb on + strandat 2508.240 kb on + strandat 2508.240 kb on + strandat 2508.321 kb on + strandat 2508.321 kb on + strandat 2508.414 kb on - strand, within IAI46_11860at 2508.471 kb on + strand, within IAI46_11860

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
remove
2,505,808 + +0.4
2,505,808 + +0.2
2,505,809 - +0.5
2,505,809 - -0.4
2,505,967 + IAI46_11850 0.26 -0.1
2,506,045 - IAI46_11850 0.34 -1.1
2,506,052 + IAI46_11850 0.35 +0.4
2,506,053 - IAI46_11850 0.35 +0.3
2,506,053 - IAI46_11850 0.35 -0.4
2,506,053 - IAI46_11850 0.35 +1.6
2,506,145 + IAI46_11850 0.46 -1.7
2,506,280 + IAI46_11850 0.61 +0.5
2,506,281 - IAI46_11850 0.61 +0.8
2,506,402 + IAI46_11850 0.75 -0.4
2,506,403 - IAI46_11850 0.75 -0.6
2,506,634 + +1.1
2,506,634 + -1.6
2,506,634 + -0.2
2,506,728 + -0.1
2,506,728 + -0.6
2,506,734 + -0.7
2,506,735 - -0.1
2,506,735 - +1.0
2,506,735 - +1.5
2,506,735 - -0.1
2,506,779 + +0.3
2,507,068 + IAI46_11855 0.45 -0.3
2,507,147 + IAI46_11855 0.55 -0.5
2,507,203 + IAI46_11855 0.63 +0.6
2,507,692 + -1.1
2,507,895 + -0.8
2,507,899 + -2.1
2,508,154 + +0.0
2,508,158 + +1.4
2,508,240 + +0.0
2,508,240 + +1.4
2,508,321 + -0.2
2,508,321 + +0.3
2,508,414 - IAI46_11860 0.13 +0.7
2,508,471 + IAI46_11860 0.18 +1.8

Or see this region's nucleotide sequence