Strain Fitness in Serratia liquefaciens MT49 around IAI46_10455

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10440 and IAI46_10445 are separated by 95 nucleotidesIAI46_10445 and IAI46_10450 are separated by 9 nucleotidesIAI46_10450 and IAI46_10455 are separated by 21 nucleotidesIAI46_10455 and IAI46_10460 are separated by 132 nucleotides IAI46_10440: IAI46_10440 - tRNA 2-thiouridine(34) synthase MnmA, at 2,207,584 to 2,208,687 _10440 IAI46_10445: IAI46_10445 - NUDIX hydrolase, at 2,208,783 to 2,209,229 _10445 IAI46_10450: IAI46_10450 - hypothetical protein, at 2,209,239 to 2,209,574 _10450 IAI46_10455: IAI46_10455 - 23S rRNA pseudouridine(2457) synthase RluE, at 2,209,596 to 2,210,222 _10455 IAI46_10460: IAI46_10460 - NADP-dependent isocitrate dehydrogenase, at 2,210,355 to 2,211,608 _10460 Position (kb) 2209 2210 2211Strain fitness (log2 ratio) -2 -1 0 1at 2208.775 kb on + strandat 2208.776 kb on - strandat 2208.797 kb on + strandat 2208.797 kb on + strandat 2208.798 kb on - strandat 2208.798 kb on - strandat 2209.001 kb on + strand, within IAI46_10445at 2209.154 kb on + strand, within IAI46_10445at 2209.155 kb on - strand, within IAI46_10445at 2209.224 kb on - strandat 2209.229 kb on + strandat 2209.230 kb on - strandat 2209.256 kb on + strandat 2209.256 kb on + strandat 2209.257 kb on - strandat 2209.264 kb on + strandat 2209.264 kb on + strandat 2209.284 kb on - strand, within IAI46_10450at 2209.408 kb on - strand, within IAI46_10450at 2209.417 kb on + strand, within IAI46_10450at 2209.450 kb on - strand, within IAI46_10450at 2209.454 kb on + strand, within IAI46_10450at 2209.455 kb on - strand, within IAI46_10450at 2209.564 kb on - strandat 2209.598 kb on - strandat 2209.598 kb on - strandat 2209.658 kb on + strandat 2209.658 kb on + strandat 2209.659 kb on - strand, within IAI46_10455at 2209.659 kb on - strand, within IAI46_10455at 2209.663 kb on + strand, within IAI46_10455at 2209.682 kb on + strand, within IAI46_10455at 2209.925 kb on - strand, within IAI46_10455at 2210.253 kb on + strandat 2210.297 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,208,775 + -1.0
2,208,776 - -0.2
2,208,797 + -0.1
2,208,797 + +0.6
2,208,798 - +0.2
2,208,798 - +1.2
2,209,001 + IAI46_10445 0.49 +0.3
2,209,154 + IAI46_10445 0.83 +0.1
2,209,155 - IAI46_10445 0.83 +1.1
2,209,224 - +1.3
2,209,229 + +0.7
2,209,230 - +0.8
2,209,256 + -0.1
2,209,256 + +0.7
2,209,257 - -0.7
2,209,264 + -0.5
2,209,264 + +0.2
2,209,284 - IAI46_10450 0.13 -1.5
2,209,408 - IAI46_10450 0.50 -0.2
2,209,417 + IAI46_10450 0.53 +1.3
2,209,450 - IAI46_10450 0.63 +0.2
2,209,454 + IAI46_10450 0.64 -0.4
2,209,455 - IAI46_10450 0.64 +0.7
2,209,564 - +0.2
2,209,598 - +1.3
2,209,598 - +0.0
2,209,658 + +0.2
2,209,658 + -2.3
2,209,659 - IAI46_10455 0.10 +0.4
2,209,659 - IAI46_10455 0.10 -0.4
2,209,663 + IAI46_10455 0.11 +0.5
2,209,682 + IAI46_10455 0.14 +0.2
2,209,925 - IAI46_10455 0.52 -0.3
2,210,253 + -0.2
2,210,297 + +1.0

Or see this region's nucleotide sequence