Strain Fitness in Serratia liquefaciens MT49 around IAI46_10080

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_10065 and IAI46_10070 overlap by 4 nucleotidesIAI46_10070 and IAI46_10075 are separated by 160 nucleotidesIAI46_10075 and IAI46_10080 are separated by 3 nucleotidesIAI46_10080 and IAI46_10085 are separated by 122 nucleotides IAI46_10065: IAI46_10065 - hypothetical protein, at 2,122,667 to 2,123,026 _10065 IAI46_10070: IAI46_10070 - LysR family transcriptional regulator, at 2,123,023 to 2,123,130 _10070 IAI46_10075: IAI46_10075 - two-component system response regulator DcuR, at 2,123,291 to 2,124,004 _10075 IAI46_10080: IAI46_10080 - two-component system sensor histidine kinase DcuS, at 2,124,008 to 2,125,609 _10080 IAI46_10085: IAI46_10085 - aldolase, at 2,125,732 to 2,126,574 _10085 Position (kb) 2124 2125 2126Strain fitness (log2 ratio) -2 -1 0 1 2at 2123.025 kb on - strandat 2123.092 kb on + strand, within IAI46_10070at 2123.093 kb on - strand, within IAI46_10070at 2123.222 kb on + strandat 2123.223 kb on - strandat 2123.228 kb on + strandat 2123.236 kb on + strandat 2123.237 kb on - strandat 2123.239 kb on + strandat 2123.240 kb on - strandat 2123.347 kb on - strandat 2123.409 kb on + strand, within IAI46_10075at 2123.410 kb on - strand, within IAI46_10075at 2123.410 kb on - strand, within IAI46_10075at 2123.413 kb on + strand, within IAI46_10075at 2123.414 kb on - strand, within IAI46_10075at 2123.414 kb on - strand, within IAI46_10075at 2123.414 kb on - strand, within IAI46_10075at 2123.418 kb on + strand, within IAI46_10075at 2123.419 kb on - strand, within IAI46_10075at 2123.524 kb on + strand, within IAI46_10075at 2123.647 kb on - strand, within IAI46_10075at 2123.647 kb on - strand, within IAI46_10075at 2123.713 kb on - strand, within IAI46_10075at 2123.830 kb on + strand, within IAI46_10075at 2123.831 kb on - strand, within IAI46_10075at 2123.831 kb on - strand, within IAI46_10075at 2123.832 kb on + strand, within IAI46_10075at 2123.832 kb on + strand, within IAI46_10075at 2123.832 kb on + strand, within IAI46_10075at 2123.832 kb on - strand, within IAI46_10075at 2123.833 kb on - strand, within IAI46_10075at 2123.833 kb on - strand, within IAI46_10075at 2123.833 kb on - strand, within IAI46_10075at 2123.833 kb on - strand, within IAI46_10075at 2123.833 kb on - strand, within IAI46_10075at 2123.833 kb on - strand, within IAI46_10075at 2123.833 kb on - strand, within IAI46_10075at 2123.833 kb on - strand, within IAI46_10075at 2123.947 kb on - strandat 2123.987 kb on - strandat 2123.999 kb on - strandat 2124.032 kb on - strandat 2124.053 kb on + strandat 2124.053 kb on + strandat 2124.224 kb on + strand, within IAI46_10080at 2124.224 kb on + strand, within IAI46_10080at 2124.225 kb on - strand, within IAI46_10080at 2124.514 kb on - strand, within IAI46_10080at 2124.531 kb on + strand, within IAI46_10080at 2124.532 kb on - strand, within IAI46_10080at 2124.541 kb on + strand, within IAI46_10080at 2124.541 kb on + strand, within IAI46_10080at 2124.542 kb on - strand, within IAI46_10080at 2124.542 kb on - strand, within IAI46_10080at 2124.612 kb on + strand, within IAI46_10080at 2124.816 kb on + strand, within IAI46_10080at 2124.817 kb on - strand, within IAI46_10080at 2124.821 kb on - strand, within IAI46_10080at 2124.901 kb on + strand, within IAI46_10080at 2124.901 kb on + strand, within IAI46_10080at 2124.902 kb on - strand, within IAI46_10080at 2124.937 kb on + strand, within IAI46_10080at 2124.937 kb on + strand, within IAI46_10080at 2125.080 kb on + strand, within IAI46_10080at 2125.080 kb on + strand, within IAI46_10080at 2125.081 kb on - strand, within IAI46_10080at 2125.084 kb on + strand, within IAI46_10080at 2125.085 kb on - strand, within IAI46_10080at 2125.151 kb on + strand, within IAI46_10080at 2125.152 kb on - strand, within IAI46_10080at 2125.546 kb on + strandat 2125.682 kb on - strandat 2125.683 kb on + strandat 2125.683 kb on + strandat 2125.684 kb on - strandat 2125.684 kb on - strandat 2125.684 kb on - strandat 2125.745 kb on + strandat 2125.746 kb on - strandat 2125.832 kb on + strand, within IAI46_10085at 2125.833 kb on - strand, within IAI46_10085at 2125.833 kb on - strand, within IAI46_10085at 2126.075 kb on + strand, within IAI46_10085at 2126.135 kb on + strand, within IAI46_10085at 2126.278 kb on - strand, within IAI46_10085at 2126.282 kb on - strand, within IAI46_10085at 2126.318 kb on + strand, within IAI46_10085at 2126.318 kb on + strand, within IAI46_10085at 2126.399 kb on + strand, within IAI46_10085at 2126.399 kb on + strand, within IAI46_10085at 2126.439 kb on + strand, within IAI46_10085at 2126.457 kb on + strand, within IAI46_10085at 2126.559 kb on + strandat 2126.560 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,123,025 - -0.1
2,123,092 + IAI46_10070 0.64 -0.3
2,123,093 - IAI46_10070 0.65 +0.4
2,123,222 + +0.2
2,123,223 - -0.4
2,123,228 + +0.1
2,123,236 + +0.8
2,123,237 - +0.4
2,123,239 + -0.5
2,123,240 - -0.9
2,123,347 - +0.9
2,123,409 + IAI46_10075 0.17 -0.1
2,123,410 - IAI46_10075 0.17 -0.1
2,123,410 - IAI46_10075 0.17 +0.6
2,123,413 + IAI46_10075 0.17 +0.5
2,123,414 - IAI46_10075 0.17 +0.3
2,123,414 - IAI46_10075 0.17 -0.1
2,123,414 - IAI46_10075 0.17 +0.0
2,123,418 + IAI46_10075 0.18 -0.5
2,123,419 - IAI46_10075 0.18 -0.5
2,123,524 + IAI46_10075 0.33 +0.1
2,123,647 - IAI46_10075 0.50 -0.2
2,123,647 - IAI46_10075 0.50 +0.0
2,123,713 - IAI46_10075 0.59 -0.1
2,123,830 + IAI46_10075 0.75 -0.5
2,123,831 - IAI46_10075 0.76 +0.2
2,123,831 - IAI46_10075 0.76 -1.1
2,123,832 + IAI46_10075 0.76 +0.9
2,123,832 + IAI46_10075 0.76 -0.2
2,123,832 + IAI46_10075 0.76 +0.9
2,123,832 - IAI46_10075 0.76 +0.9
2,123,833 - IAI46_10075 0.76 +1.2
2,123,833 - IAI46_10075 0.76 +0.1
2,123,833 - IAI46_10075 0.76 +0.7
2,123,833 - IAI46_10075 0.76 +0.3
2,123,833 - IAI46_10075 0.76 -0.9
2,123,833 - IAI46_10075 0.76 +0.1
2,123,833 - IAI46_10075 0.76 +0.0
2,123,833 - IAI46_10075 0.76 -0.4
2,123,947 - -0.2
2,123,987 - +0.5
2,123,999 - +0.9
2,124,032 - +0.5
2,124,053 + +2.0
2,124,053 + -1.1
2,124,224 + IAI46_10080 0.13 +0.8
2,124,224 + IAI46_10080 0.13 +0.0
2,124,225 - IAI46_10080 0.14 +0.7
2,124,514 - IAI46_10080 0.32 -0.3
2,124,531 + IAI46_10080 0.33 +0.8
2,124,532 - IAI46_10080 0.33 +0.7
2,124,541 + IAI46_10080 0.33 +0.5
2,124,541 + IAI46_10080 0.33 -0.3
2,124,542 - IAI46_10080 0.33 +0.6
2,124,542 - IAI46_10080 0.33 +0.1
2,124,612 + IAI46_10080 0.38 +1.3
2,124,816 + IAI46_10080 0.50 +1.0
2,124,817 - IAI46_10080 0.50 -1.0
2,124,821 - IAI46_10080 0.51 -0.3
2,124,901 + IAI46_10080 0.56 +0.4
2,124,901 + IAI46_10080 0.56 +0.2
2,124,902 - IAI46_10080 0.56 -0.4
2,124,937 + IAI46_10080 0.58 +0.4
2,124,937 + IAI46_10080 0.58 +1.1
2,125,080 + IAI46_10080 0.67 -0.1
2,125,080 + IAI46_10080 0.67 +0.9
2,125,081 - IAI46_10080 0.67 -0.8
2,125,084 + IAI46_10080 0.67 +0.3
2,125,085 - IAI46_10080 0.67 -0.3
2,125,151 + IAI46_10080 0.71 +0.1
2,125,152 - IAI46_10080 0.71 -0.2
2,125,546 + +0.4
2,125,682 - -0.6
2,125,683 + -0.8
2,125,683 + +0.0
2,125,684 - +0.2
2,125,684 - -2.4
2,125,684 - +1.3
2,125,745 + +0.9
2,125,746 - +1.5
2,125,832 + IAI46_10085 0.12 -0.5
2,125,833 - IAI46_10085 0.12 +1.3
2,125,833 - IAI46_10085 0.12 +0.1
2,126,075 + IAI46_10085 0.41 +0.1
2,126,135 + IAI46_10085 0.48 +0.4
2,126,278 - IAI46_10085 0.65 +0.2
2,126,282 - IAI46_10085 0.65 +0.6
2,126,318 + IAI46_10085 0.70 -1.1
2,126,318 + IAI46_10085 0.70 +0.9
2,126,399 + IAI46_10085 0.79 +0.5
2,126,399 + IAI46_10085 0.79 +0.7
2,126,439 + IAI46_10085 0.84 -0.4
2,126,457 + IAI46_10085 0.86 +0.7
2,126,559 + +1.0
2,126,560 - -0.1

Or see this region's nucleotide sequence