Strain Fitness in Serratia liquefaciens MT49 around IAI46_09990

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09985 and IAI46_09990 are separated by 172 nucleotidesIAI46_09990 and IAI46_09995 are separated by 30 nucleotidesIAI46_09995 and IAI46_10000 are separated by 372 nucleotides IAI46_09985: IAI46_09985 - RNA polymerase-binding protein DksA, at 2,111,724 to 2,112,149 _09985 IAI46_09990: IAI46_09990 - prolyl aminopeptidase, at 2,112,322 to 2,113,275 _09990 IAI46_09995: IAI46_09995 - DNA polymerase III subunit theta, at 2,113,306 to 2,113,536 _09995 IAI46_10000: IAI46_10000 - non-heme ferritin, at 2,113,909 to 2,114,427 _10000 Position (kb) 2112 2113 2114Strain fitness (log2 ratio) -2 -1 0 1at 2111.398 kb on - strandat 2111.398 kb on - strandat 2111.404 kb on - strandat 2111.410 kb on - strandat 2111.421 kb on + strandat 2111.524 kb on + strandat 2111.545 kb on + strandat 2111.585 kb on - strandat 2111.624 kb on + strandat 2111.782 kb on - strand, within IAI46_09985at 2112.006 kb on + strand, within IAI46_09985at 2112.007 kb on - strand, within IAI46_09985at 2112.018 kb on + strand, within IAI46_09985at 2112.048 kb on - strand, within IAI46_09985at 2112.048 kb on - strand, within IAI46_09985at 2112.198 kb on + strandat 2112.223 kb on - strandat 2112.239 kb on + strandat 2112.240 kb on - strandat 2112.333 kb on - strandat 2112.353 kb on + strandat 2112.361 kb on + strandat 2112.361 kb on + strandat 2112.361 kb on + strandat 2112.361 kb on + strandat 2112.362 kb on - strandat 2112.362 kb on - strandat 2112.403 kb on + strandat 2112.518 kb on + strand, within IAI46_09990at 2112.519 kb on - strand, within IAI46_09990at 2112.738 kb on + strand, within IAI46_09990at 2112.769 kb on + strand, within IAI46_09990at 2112.769 kb on + strand, within IAI46_09990at 2112.769 kb on + strand, within IAI46_09990at 2112.770 kb on - strand, within IAI46_09990at 2113.030 kb on - strand, within IAI46_09990at 2113.092 kb on + strand, within IAI46_09990at 2113.120 kb on + strand, within IAI46_09990at 2113.188 kb on + strandat 2113.188 kb on + strandat 2113.188 kb on + strandat 2113.189 kb on - strandat 2113.241 kb on + strandat 2113.341 kb on - strand, within IAI46_09995at 2113.445 kb on + strand, within IAI46_09995at 2113.529 kb on + strandat 2113.530 kb on - strandat 2113.539 kb on + strandat 2113.548 kb on + strandat 2113.580 kb on - strandat 2113.664 kb on - strandat 2113.864 kb on - strandat 2113.964 kb on - strand, within IAI46_10000at 2113.979 kb on - strand, within IAI46_10000at 2114.179 kb on + strand, within IAI46_10000at 2114.211 kb on + strand, within IAI46_10000at 2114.212 kb on - strand, within IAI46_10000at 2114.248 kb on + strand, within IAI46_10000at 2114.248 kb on + strand, within IAI46_10000at 2114.249 kb on - strand, within IAI46_10000

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,111,398 - -0.3
2,111,398 - +0.1
2,111,404 - +0.6
2,111,410 - +1.1
2,111,421 + +0.2
2,111,524 + +0.5
2,111,545 + +1.4
2,111,585 - +0.2
2,111,624 + -0.4
2,111,782 - IAI46_09985 0.14 -1.7
2,112,006 + IAI46_09985 0.66 +0.7
2,112,007 - IAI46_09985 0.66 +0.2
2,112,018 + IAI46_09985 0.69 -0.4
2,112,048 - IAI46_09985 0.76 -0.6
2,112,048 - IAI46_09985 0.76 +1.2
2,112,198 + +0.5
2,112,223 - +1.0
2,112,239 + +1.5
2,112,240 - +0.1
2,112,333 - -0.3
2,112,353 + +0.5
2,112,361 + -0.8
2,112,361 + -0.8
2,112,361 + -0.1
2,112,361 + -0.6
2,112,362 - +1.5
2,112,362 - -1.0
2,112,403 + -0.4
2,112,518 + IAI46_09990 0.21 -1.9
2,112,519 - IAI46_09990 0.21 -0.3
2,112,738 + IAI46_09990 0.44 +0.5
2,112,769 + IAI46_09990 0.47 +1.4
2,112,769 + IAI46_09990 0.47 +0.4
2,112,769 + IAI46_09990 0.47 -0.4
2,112,770 - IAI46_09990 0.47 +1.0
2,113,030 - IAI46_09990 0.74 -0.8
2,113,092 + IAI46_09990 0.81 -0.2
2,113,120 + IAI46_09990 0.84 -0.5
2,113,188 + +0.0
2,113,188 + +0.7
2,113,188 + -0.8
2,113,189 - +0.3
2,113,241 + -1.2
2,113,341 - IAI46_09995 0.15 -0.1
2,113,445 + IAI46_09995 0.60 +0.9
2,113,529 + -0.4
2,113,530 - +0.9
2,113,539 + -1.9
2,113,548 + -0.7
2,113,580 - -0.6
2,113,664 - -0.2
2,113,864 - -0.3
2,113,964 - IAI46_10000 0.11 -0.1
2,113,979 - IAI46_10000 0.13 -2.3
2,114,179 + IAI46_10000 0.52 +0.0
2,114,211 + IAI46_10000 0.58 +0.7
2,114,212 - IAI46_10000 0.58 +0.4
2,114,248 + IAI46_10000 0.65 +0.2
2,114,248 + IAI46_10000 0.65 +1.0
2,114,249 - IAI46_10000 0.66 +0.9

Or see this region's nucleotide sequence