Strain Fitness in Serratia liquefaciens MT49 around IAI46_09655

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09640 and IAI46_09645 overlap by 4 nucleotidesIAI46_09645 and IAI46_09650 are separated by 4 nucleotidesIAI46_09650 and IAI46_09655 overlap by 1 nucleotidesIAI46_09655 and IAI46_09660 are separated by 49 nucleotides IAI46_09640: IAI46_09640 - winged helix-turn-helix transcriptional regulator, at 2,046,198 to 2,046,509 _09640 IAI46_09645: IAI46_09645 - YeeE/YedE family protein, at 2,046,506 to 2,046,940 _09645 IAI46_09650: IAI46_09650 - YeeE/YedE family protein, at 2,046,945 to 2,047,364 _09650 IAI46_09655: IAI46_09655 - VOC family protein, at 2,047,364 to 2,047,762 _09655 IAI46_09660: IAI46_09660 - peptide MFS transporter, at 2,047,812 to 2,049,365 _09660 Position (kb) 2047 2048Strain fitness (log2 ratio) -1 0 1 2at 2046.414 kb on - strand, within IAI46_09640at 2046.423 kb on + strand, within IAI46_09640at 2046.426 kb on + strand, within IAI46_09640at 2046.426 kb on + strand, within IAI46_09640at 2046.461 kb on + strand, within IAI46_09640at 2046.469 kb on + strand, within IAI46_09640at 2046.471 kb on + strand, within IAI46_09640at 2046.472 kb on - strand, within IAI46_09640at 2046.653 kb on - strand, within IAI46_09645at 2046.781 kb on - strand, within IAI46_09645at 2046.886 kb on + strand, within IAI46_09645at 2046.887 kb on - strand, within IAI46_09645at 2046.901 kb on + strandat 2046.939 kb on - strandat 2046.949 kb on - strandat 2046.968 kb on - strandat 2047.162 kb on + strand, within IAI46_09650at 2047.163 kb on - strand, within IAI46_09650at 2047.336 kb on - strandat 2047.336 kb on - strandat 2047.343 kb on + strandat 2047.343 kb on + strandat 2047.362 kb on + strandat 2047.363 kb on - strandat 2047.371 kb on + strandat 2047.599 kb on - strand, within IAI46_09655at 2047.674 kb on - strand, within IAI46_09655at 2047.674 kb on - strand, within IAI46_09655at 2047.810 kb on + strandat 2047.844 kb on + strandat 2047.844 kb on + strandat 2047.971 kb on - strand, within IAI46_09660at 2048.130 kb on - strand, within IAI46_09660at 2048.273 kb on + strand, within IAI46_09660at 2048.274 kb on - strand, within IAI46_09660at 2048.274 kb on - strand, within IAI46_09660at 2048.274 kb on - strand, within IAI46_09660at 2048.300 kb on + strand, within IAI46_09660at 2048.392 kb on + strand, within IAI46_09660at 2048.530 kb on + strand, within IAI46_09660at 2048.535 kb on - strand, within IAI46_09660at 2048.535 kb on - strand, within IAI46_09660at 2048.540 kb on - strand, within IAI46_09660at 2048.735 kb on - strand, within IAI46_09660

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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2,046,414 - IAI46_09640 0.69 +0.3
2,046,423 + IAI46_09640 0.72 -0.4
2,046,426 + IAI46_09640 0.73 -1.6
2,046,426 + IAI46_09640 0.73 -0.1
2,046,461 + IAI46_09640 0.84 +1.3
2,046,469 + IAI46_09640 0.87 -0.3
2,046,471 + IAI46_09640 0.88 +0.2
2,046,472 - IAI46_09640 0.88 +1.0
2,046,653 - IAI46_09645 0.34 -0.2
2,046,781 - IAI46_09645 0.63 -1.7
2,046,886 + IAI46_09645 0.87 +0.0
2,046,887 - IAI46_09645 0.88 -0.9
2,046,901 + +0.4
2,046,939 - +0.4
2,046,949 - -0.0
2,046,968 - -0.4
2,047,162 + IAI46_09650 0.52 -0.1
2,047,163 - IAI46_09650 0.52 +0.3
2,047,336 - +0.2
2,047,336 - +0.1
2,047,343 + +0.1
2,047,343 + +0.3
2,047,362 + +0.3
2,047,363 - +0.4
2,047,371 + +0.9
2,047,599 - IAI46_09655 0.59 -0.3
2,047,674 - IAI46_09655 0.78 -0.3
2,047,674 - IAI46_09655 0.78 -0.2
2,047,810 + -1.0
2,047,844 + -0.2
2,047,844 + +0.3
2,047,971 - IAI46_09660 0.10 -0.2
2,048,130 - IAI46_09660 0.20 +0.3
2,048,273 + IAI46_09660 0.30 +0.4
2,048,274 - IAI46_09660 0.30 +0.2
2,048,274 - IAI46_09660 0.30 -0.8
2,048,274 - IAI46_09660 0.30 -1.0
2,048,300 + IAI46_09660 0.31 +1.3
2,048,392 + IAI46_09660 0.37 +0.5
2,048,530 + IAI46_09660 0.46 -1.0
2,048,535 - IAI46_09660 0.47 +1.3
2,048,535 - IAI46_09660 0.47 +0.3
2,048,540 - IAI46_09660 0.47 +1.3
2,048,735 - IAI46_09660 0.59 +2.1

Or see this region's nucleotide sequence