Strain Fitness in Serratia liquefaciens MT49 around IAI46_09010

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_09000 and IAI46_09005 are separated by 68 nucleotidesIAI46_09005 and IAI46_09010 overlap by 17 nucleotidesIAI46_09010 and IAI46_09015 are separated by 119 nucleotidesIAI46_09015 and IAI46_09020 are separated by 67 nucleotides IAI46_09000: IAI46_09000 - LysE family transporter, at 1,930,822 to 1,931,439 _09000 IAI46_09005: IAI46_09005 - LysR family transcriptional regulator, at 1,931,508 to 1,932,431 _09005 IAI46_09010: IAI46_09010 - helix-turn-helix domain-containing protein, at 1,932,415 to 1,932,885 _09010 IAI46_09015: IAI46_09015 - helix-turn-helix transcriptional regulator, at 1,933,005 to 1,933,580 _09015 IAI46_09020: IAI46_09020 - DMT family transporter, at 1,933,648 to 1,934,565 _09020 Position (kb) 1932 1933Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1931.481 kb on - strandat 1931.691 kb on - strand, within IAI46_09005at 1931.691 kb on - strand, within IAI46_09005at 1931.724 kb on + strand, within IAI46_09005at 1931.725 kb on - strand, within IAI46_09005at 1931.833 kb on + strand, within IAI46_09005at 1931.854 kb on + strand, within IAI46_09005at 1931.854 kb on + strand, within IAI46_09005at 1932.346 kb on - strandat 1932.517 kb on - strand, within IAI46_09010at 1932.551 kb on + strand, within IAI46_09010at 1932.552 kb on - strand, within IAI46_09010at 1932.573 kb on + strand, within IAI46_09010at 1932.574 kb on - strand, within IAI46_09010at 1932.598 kb on - strand, within IAI46_09010at 1932.614 kb on - strand, within IAI46_09010at 1932.720 kb on + strand, within IAI46_09010at 1932.721 kb on - strand, within IAI46_09010at 1932.721 kb on - strand, within IAI46_09010at 1932.721 kb on - strand, within IAI46_09010at 1932.724 kb on + strand, within IAI46_09010at 1932.724 kb on + strand, within IAI46_09010at 1932.725 kb on - strand, within IAI46_09010at 1932.859 kb on + strandat 1932.859 kb on + strandat 1933.529 kb on - strandat 1933.671 kb on + strandat 1933.694 kb on + strandat 1933.818 kb on + strand, within IAI46_09020at 1933.836 kb on - strand, within IAI46_09020at 1933.870 kb on + strand, within IAI46_09020

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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1,931,481 - +0.1
1,931,691 - IAI46_09005 0.20 -0.4
1,931,691 - IAI46_09005 0.20 -0.2
1,931,724 + IAI46_09005 0.23 -0.3
1,931,725 - IAI46_09005 0.23 +0.4
1,931,833 + IAI46_09005 0.35 -1.0
1,931,854 + IAI46_09005 0.37 -0.3
1,931,854 + IAI46_09005 0.37 -0.1
1,932,346 - -2.9
1,932,517 - IAI46_09010 0.22 +1.2
1,932,551 + IAI46_09010 0.29 +0.4
1,932,552 - IAI46_09010 0.29 +0.6
1,932,573 + IAI46_09010 0.34 +1.1
1,932,574 - IAI46_09010 0.34 +2.5
1,932,598 - IAI46_09010 0.39 +0.2
1,932,614 - IAI46_09010 0.42 -0.3
1,932,720 + IAI46_09010 0.65 +0.8
1,932,721 - IAI46_09010 0.65 -0.2
1,932,721 - IAI46_09010 0.65 -0.6
1,932,721 - IAI46_09010 0.65 -0.9
1,932,724 + IAI46_09010 0.66 -1.0
1,932,724 + IAI46_09010 0.66 +0.3
1,932,725 - IAI46_09010 0.66 +1.0
1,932,859 + +1.0
1,932,859 + +0.6
1,933,529 - -0.1
1,933,671 + -0.5
1,933,694 + -0.1
1,933,818 + IAI46_09020 0.19 -0.4
1,933,836 - IAI46_09020 0.20 +0.8
1,933,870 + IAI46_09020 0.24 +0.3

Or see this region's nucleotide sequence