Strain Fitness in Serratia liquefaciens MT49 around IAI46_08565

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_08560 and IAI46_08565 are separated by 346 nucleotidesIAI46_08565 and IAI46_08570 are separated by 7 nucleotides IAI46_08560: IAI46_08560 - DNA translocase FtsK 4TM domain-containing protein, at 1,823,209 to 1,826,784 _08560 IAI46_08565: IAI46_08565 - outer membrane lipoprotein chaperone LolA, at 1,827,131 to 1,827,742 _08565 IAI46_08570: IAI46_08570 - replication-associated recombination protein A, at 1,827,750 to 1,829,093 _08570 Position (kb) 1827 1828Strain fitness (log2 ratio) -1 0 1 2at 1826.808 kb on - strandat 1826.813 kb on + strandat 1826.898 kb on + strandat 1826.899 kb on - strandat 1826.899 kb on - strandat 1826.921 kb on + strandat 1826.921 kb on + strandat 1826.999 kb on - strandat 1827.056 kb on + strandat 1827.065 kb on + strandat 1827.115 kb on + strandat 1827.115 kb on + strandat 1827.755 kb on + strandat 1827.831 kb on + strandat 1827.832 kb on - strandat 1827.832 kb on - strandat 1827.832 kb on - strandat 1828.093 kb on + strand, within IAI46_08570at 1828.154 kb on + strand, within IAI46_08570at 1828.160 kb on + strand, within IAI46_08570at 1828.228 kb on - strand, within IAI46_08570at 1828.581 kb on + strand, within IAI46_08570at 1828.595 kb on + strand, within IAI46_08570at 1828.595 kb on + strand, within IAI46_08570at 1828.617 kb on + strand, within IAI46_08570at 1828.617 kb on + strand, within IAI46_08570at 1828.617 kb on + strand, within IAI46_08570at 1828.617 kb on + strand, within IAI46_08570at 1828.679 kb on + strand, within IAI46_08570

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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1,826,808 - +0.3
1,826,813 + +0.8
1,826,898 + +1.1
1,826,899 - -0.0
1,826,899 - +0.4
1,826,921 + +0.2
1,826,921 + +1.8
1,826,999 - +0.7
1,827,056 + +1.6
1,827,065 + +0.4
1,827,115 + -0.8
1,827,115 + +0.1
1,827,755 + -0.7
1,827,831 + +0.0
1,827,832 - +0.6
1,827,832 - -0.6
1,827,832 - -0.4
1,828,093 + IAI46_08570 0.26 -0.3
1,828,154 + IAI46_08570 0.30 -0.3
1,828,160 + IAI46_08570 0.31 +0.1
1,828,228 - IAI46_08570 0.36 -0.6
1,828,581 + IAI46_08570 0.62 +1.2
1,828,595 + IAI46_08570 0.63 -0.2
1,828,595 + IAI46_08570 0.63 +0.2
1,828,617 + IAI46_08570 0.65 +0.7
1,828,617 + IAI46_08570 0.65 -0.9
1,828,617 + IAI46_08570 0.65 +0.2
1,828,617 + IAI46_08570 0.65 -1.6
1,828,679 + IAI46_08570 0.69 +0.2

Or see this region's nucleotide sequence