Strain Fitness in Serratia liquefaciens MT49 around IAI46_07150

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_07145 and IAI46_07150 are separated by 141 nucleotidesIAI46_07150 and IAI46_07155 are separated by 120 nucleotides IAI46_07145: IAI46_07145 - GntR family transcriptional regulator, at 1,508,087 to 1,508,992 _07145 IAI46_07150: IAI46_07150 - zinc-binding alcohol dehydrogenase family protein, at 1,509,134 to 1,510,159 _07150 IAI46_07155: IAI46_07155 - phosphonate ABC transporter ATP-binding protein, at 1,510,280 to 1,511,113 _07155 Position (kb) 1509 1510 1511Strain fitness (log2 ratio) -1 0 1 2at 1508.200 kb on + strand, within IAI46_07145at 1508.227 kb on + strand, within IAI46_07145at 1508.263 kb on - strand, within IAI46_07145at 1508.376 kb on + strand, within IAI46_07145at 1508.377 kb on - strand, within IAI46_07145at 1508.467 kb on + strand, within IAI46_07145at 1508.587 kb on - strand, within IAI46_07145at 1508.707 kb on - strand, within IAI46_07145at 1508.795 kb on - strand, within IAI46_07145at 1508.858 kb on + strand, within IAI46_07145at 1508.858 kb on + strand, within IAI46_07145at 1508.859 kb on - strand, within IAI46_07145at 1508.859 kb on - strand, within IAI46_07145at 1508.859 kb on - strand, within IAI46_07145at 1508.859 kb on - strand, within IAI46_07145at 1508.881 kb on - strand, within IAI46_07145at 1508.958 kb on - strandat 1509.021 kb on + strandat 1509.022 kb on - strandat 1509.033 kb on - strandat 1509.043 kb on - strandat 1509.043 kb on - strandat 1509.046 kb on + strandat 1509.052 kb on + strandat 1509.101 kb on - strandat 1509.119 kb on - strandat 1509.153 kb on + strandat 1509.154 kb on - strandat 1509.182 kb on + strandat 1509.182 kb on + strandat 1509.182 kb on + strandat 1509.183 kb on - strandat 1509.235 kb on - strandat 1509.309 kb on + strand, within IAI46_07150at 1509.325 kb on - strand, within IAI46_07150at 1509.325 kb on - strand, within IAI46_07150at 1509.399 kb on - strand, within IAI46_07150at 1509.500 kb on + strand, within IAI46_07150at 1509.501 kb on - strand, within IAI46_07150at 1509.958 kb on + strand, within IAI46_07150at 1509.970 kb on + strand, within IAI46_07150at 1510.100 kb on + strandat 1510.100 kb on + strandat 1510.131 kb on + strandat 1510.131 kb on + strandat 1510.131 kb on + strandat 1510.131 kb on + strandat 1510.132 kb on - strandat 1510.132 kb on - strandat 1510.132 kb on - strandat 1510.132 kb on - strandat 1510.135 kb on + strandat 1510.135 kb on + strandat 1510.222 kb on + strandat 1510.222 kb on + strandat 1510.228 kb on + strandat 1510.255 kb on + strandat 1510.255 kb on + strandat 1510.297 kb on - strandat 1510.487 kb on - strand, within IAI46_07155at 1510.549 kb on - strand, within IAI46_07155at 1510.723 kb on + strand, within IAI46_07155at 1510.765 kb on + strand, within IAI46_07155at 1510.766 kb on - strand, within IAI46_07155at 1510.986 kb on + strand, within IAI46_07155at 1510.986 kb on + strand, within IAI46_07155at 1510.987 kb on - strand, within IAI46_07155at 1510.994 kb on + strand, within IAI46_07155at 1510.995 kb on - strand, within IAI46_07155at 1510.995 kb on - strand, within IAI46_07155at 1511.084 kb on + strandat 1511.085 kb on - strandat 1511.085 kb on - strandat 1511.085 kb on - strandat 1511.145 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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1,508,200 + IAI46_07145 0.12 -0.3
1,508,227 + IAI46_07145 0.15 +0.4
1,508,263 - IAI46_07145 0.19 +0.5
1,508,376 + IAI46_07145 0.32 +1.4
1,508,377 - IAI46_07145 0.32 -0.2
1,508,467 + IAI46_07145 0.42 -0.1
1,508,587 - IAI46_07145 0.55 -1.2
1,508,707 - IAI46_07145 0.68 -0.6
1,508,795 - IAI46_07145 0.78 +0.2
1,508,858 + IAI46_07145 0.85 -0.3
1,508,858 + IAI46_07145 0.85 -0.3
1,508,859 - IAI46_07145 0.85 +0.4
1,508,859 - IAI46_07145 0.85 +0.4
1,508,859 - IAI46_07145 0.85 -0.8
1,508,859 - IAI46_07145 0.85 +0.4
1,508,881 - IAI46_07145 0.88 -1.4
1,508,958 - -0.8
1,509,021 + +0.4
1,509,022 - +1.4
1,509,033 - +0.2
1,509,043 - -0.2
1,509,043 - -0.0
1,509,046 + +1.4
1,509,052 + -0.1
1,509,101 - -0.3
1,509,119 - -0.1
1,509,153 + -0.4
1,509,154 - +2.5
1,509,182 + +0.6
1,509,182 + +0.2
1,509,182 + +0.8
1,509,183 - -0.4
1,509,235 - +0.9
1,509,309 + IAI46_07150 0.17 +0.0
1,509,325 - IAI46_07150 0.19 +0.7
1,509,325 - IAI46_07150 0.19 -0.5
1,509,399 - IAI46_07150 0.26 -1.2
1,509,500 + IAI46_07150 0.36 -0.3
1,509,501 - IAI46_07150 0.36 +0.1
1,509,958 + IAI46_07150 0.80 +0.0
1,509,970 + IAI46_07150 0.81 +0.6
1,510,100 + +0.2
1,510,100 + +0.7
1,510,131 + -1.1
1,510,131 + -0.3
1,510,131 + +0.1
1,510,131 + +0.0
1,510,132 - +1.1
1,510,132 - +0.7
1,510,132 - -0.0
1,510,132 - +0.4
1,510,135 + +0.9
1,510,135 + -0.3
1,510,222 + -0.3
1,510,222 + -0.3
1,510,228 + -0.9
1,510,255 + +0.8
1,510,255 + -1.0
1,510,297 - +0.6
1,510,487 - IAI46_07155 0.25 +1.5
1,510,549 - IAI46_07155 0.32 +0.3
1,510,723 + IAI46_07155 0.53 +0.0
1,510,765 + IAI46_07155 0.58 +0.1
1,510,766 - IAI46_07155 0.58 +1.0
1,510,986 + IAI46_07155 0.85 +0.4
1,510,986 + IAI46_07155 0.85 +0.5
1,510,987 - IAI46_07155 0.85 -0.5
1,510,994 + IAI46_07155 0.86 +0.7
1,510,995 - IAI46_07155 0.86 -0.1
1,510,995 - IAI46_07155 0.86 -0.1
1,511,084 + -1.2
1,511,085 - +0.5
1,511,085 - -0.6
1,511,085 - -0.1
1,511,145 + -0.5

Or see this region's nucleotide sequence