Strain Fitness in Serratia liquefaciens MT49 around IAI46_06935

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_06930 and IAI46_06935 are separated by 36 nucleotidesIAI46_06935 and IAI46_06940 are separated by 42 nucleotides IAI46_06930: IAI46_06930 - D-alanine--D-alanine ligase, at 1,468,187 to 1,469,290 _06930 IAI46_06935: IAI46_06935 - ABC transporter substrate-binding protein, at 1,469,327 to 1,470,106 _06935 IAI46_06940: IAI46_06940 - pyridoxal phosphate-dependent aminotransferase, at 1,470,149 to 1,471,303 _06940 Position (kb) 1469 1470 1471Strain fitness (log2 ratio) -1 0 1at 1468.356 kb on - strand, within IAI46_06930at 1468.406 kb on - strand, within IAI46_06930at 1468.662 kb on + strand, within IAI46_06930at 1468.739 kb on - strand, within IAI46_06930at 1468.946 kb on + strand, within IAI46_06930at 1468.946 kb on + strand, within IAI46_06930at 1468.947 kb on - strand, within IAI46_06930at 1468.964 kb on + strand, within IAI46_06930at 1468.964 kb on + strand, within IAI46_06930at 1469.159 kb on - strand, within IAI46_06930at 1469.159 kb on - strand, within IAI46_06930at 1469.168 kb on + strand, within IAI46_06930at 1469.168 kb on + strand, within IAI46_06930at 1469.169 kb on - strand, within IAI46_06930at 1469.348 kb on - strandat 1469.607 kb on + strand, within IAI46_06935at 1469.608 kb on - strand, within IAI46_06935at 1469.628 kb on + strand, within IAI46_06935at 1469.628 kb on + strand, within IAI46_06935at 1469.628 kb on + strand, within IAI46_06935at 1469.673 kb on + strand, within IAI46_06935at 1469.784 kb on + strand, within IAI46_06935at 1469.785 kb on - strand, within IAI46_06935at 1469.785 kb on - strand, within IAI46_06935at 1470.006 kb on + strand, within IAI46_06935at 1470.007 kb on - strand, within IAI46_06935at 1470.150 kb on + strandat 1470.150 kb on + strandat 1470.150 kb on + strandat 1470.150 kb on + strandat 1470.150 kb on + strandat 1470.218 kb on - strandat 1470.244 kb on - strandat 1470.262 kb on + strandat 1470.346 kb on + strand, within IAI46_06940at 1470.346 kb on + strand, within IAI46_06940at 1470.347 kb on - strand, within IAI46_06940at 1470.427 kb on - strand, within IAI46_06940at 1470.447 kb on + strand, within IAI46_06940at 1470.447 kb on + strand, within IAI46_06940at 1470.484 kb on - strand, within IAI46_06940at 1470.484 kb on - strand, within IAI46_06940at 1470.514 kb on + strand, within IAI46_06940at 1470.525 kb on - strand, within IAI46_06940at 1470.595 kb on - strand, within IAI46_06940at 1470.694 kb on - strand, within IAI46_06940at 1470.924 kb on + strand, within IAI46_06940at 1470.924 kb on + strand, within IAI46_06940at 1470.924 kb on + strand, within IAI46_06940at 1470.924 kb on + strand, within IAI46_06940at 1470.925 kb on - strand, within IAI46_06940at 1470.925 kb on - strand, within IAI46_06940at 1470.925 kb on - strand, within IAI46_06940at 1470.925 kb on - strand, within IAI46_06940at 1470.949 kb on - strand, within IAI46_06940at 1470.994 kb on - strand, within IAI46_06940at 1470.994 kb on - strand, within IAI46_06940at 1471.044 kb on + strand, within IAI46_06940at 1471.044 kb on + strand, within IAI46_06940at 1471.044 kb on + strand, within IAI46_06940at 1471.045 kb on - strand, within IAI46_06940at 1471.057 kb on - strand, within IAI46_06940at 1471.057 kb on - strand, within IAI46_06940at 1471.058 kb on + strand, within IAI46_06940at 1471.058 kb on + strand, within IAI46_06940at 1471.059 kb on - strand, within IAI46_06940

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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1,468,356 - IAI46_06930 0.15 +1.7
1,468,406 - IAI46_06930 0.20 -0.3
1,468,662 + IAI46_06930 0.43 -0.2
1,468,739 - IAI46_06930 0.50 -0.0
1,468,946 + IAI46_06930 0.69 +0.7
1,468,946 + IAI46_06930 0.69 +0.2
1,468,947 - IAI46_06930 0.69 -0.3
1,468,964 + IAI46_06930 0.70 +0.1
1,468,964 + IAI46_06930 0.70 +0.5
1,469,159 - IAI46_06930 0.88 -0.8
1,469,159 - IAI46_06930 0.88 +0.0
1,469,168 + IAI46_06930 0.89 +0.8
1,469,168 + IAI46_06930 0.89 -0.1
1,469,169 - IAI46_06930 0.89 +0.0
1,469,348 - -0.3
1,469,607 + IAI46_06935 0.36 -1.2
1,469,608 - IAI46_06935 0.36 +0.4
1,469,628 + IAI46_06935 0.39 +0.8
1,469,628 + IAI46_06935 0.39 +0.3
1,469,628 + IAI46_06935 0.39 +1.5
1,469,673 + IAI46_06935 0.44 -0.4
1,469,784 + IAI46_06935 0.59 -0.0
1,469,785 - IAI46_06935 0.59 +0.1
1,469,785 - IAI46_06935 0.59 +0.5
1,470,006 + IAI46_06935 0.87 +1.3
1,470,007 - IAI46_06935 0.87 -0.2
1,470,150 + +0.3
1,470,150 + +0.6
1,470,150 + -0.9
1,470,150 + +0.2
1,470,150 + +1.2
1,470,218 - -0.6
1,470,244 - +0.1
1,470,262 + -0.2
1,470,346 + IAI46_06940 0.17 -0.1
1,470,346 + IAI46_06940 0.17 +1.2
1,470,347 - IAI46_06940 0.17 +1.0
1,470,427 - IAI46_06940 0.24 -1.2
1,470,447 + IAI46_06940 0.26 -0.1
1,470,447 + IAI46_06940 0.26 -0.1
1,470,484 - IAI46_06940 0.29 +0.1
1,470,484 - IAI46_06940 0.29 -1.7
1,470,514 + IAI46_06940 0.32 +1.1
1,470,525 - IAI46_06940 0.33 +0.1
1,470,595 - IAI46_06940 0.39 +0.9
1,470,694 - IAI46_06940 0.47 +1.2
1,470,924 + IAI46_06940 0.67 +1.2
1,470,924 + IAI46_06940 0.67 +0.4
1,470,924 + IAI46_06940 0.67 +0.2
1,470,924 + IAI46_06940 0.67 -0.4
1,470,925 - IAI46_06940 0.67 +0.4
1,470,925 - IAI46_06940 0.67 -0.0
1,470,925 - IAI46_06940 0.67 +0.2
1,470,925 - IAI46_06940 0.67 +0.8
1,470,949 - IAI46_06940 0.69 -0.0
1,470,994 - IAI46_06940 0.73 -0.1
1,470,994 - IAI46_06940 0.73 -0.4
1,471,044 + IAI46_06940 0.77 -0.9
1,471,044 + IAI46_06940 0.77 +0.2
1,471,044 + IAI46_06940 0.77 +0.2
1,471,045 - IAI46_06940 0.78 +0.1
1,471,057 - IAI46_06940 0.79 -0.2
1,471,057 - IAI46_06940 0.79 +1.2
1,471,058 + IAI46_06940 0.79 +0.3
1,471,058 + IAI46_06940 0.79 +0.8
1,471,059 - IAI46_06940 0.79 +0.8

Or see this region's nucleotide sequence