Strain Fitness in Serratia liquefaciens MT49 around IAI46_04385

Experiment: dichromate 20 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_04375 and IAI46_04380 are separated by 6 nucleotidesIAI46_04380 and IAI46_04385 are separated by 15 nucleotidesIAI46_04385 and IAI46_04390 are separated by 0 nucleotides IAI46_04375: IAI46_04375 - NADH:ubiquinone reductase (Na(+)-transporting) subunit D, at 937,548 to 938,177 _04375 IAI46_04380: IAI46_04380 - NADH:ubiquinone reductase (Na(+)-transporting) subunit E, at 938,184 to 938,780 _04380 IAI46_04385: IAI46_04385 - NADH:ubiquinone reductase (Na(+)-transporting) subunit F, at 938,796 to 940,019 _04385 IAI46_04390: IAI46_04390 - FAD:protein FMN transferase, at 940,020 to 941,051 _04390 Position (kb) 938 939 940 941Strain fitness (log2 ratio) -1 0 1 2at 937.824 kb on + strand, within IAI46_04375at 937.825 kb on - strand, within IAI46_04375at 937.883 kb on + strand, within IAI46_04375at 937.908 kb on + strand, within IAI46_04375at 937.909 kb on - strand, within IAI46_04375at 937.909 kb on - strand, within IAI46_04375at 937.909 kb on - strand, within IAI46_04375at 937.909 kb on - strand, within IAI46_04375at 938.071 kb on - strand, within IAI46_04375at 938.114 kb on + strand, within IAI46_04375at 938.193 kb on + strandat 938.193 kb on + strandat 938.194 kb on - strandat 938.194 kb on - strandat 938.194 kb on - strandat 938.194 kb on - strandat 938.194 kb on - strandat 938.195 kb on + strandat 938.196 kb on - strandat 938.196 kb on - strandat 938.261 kb on + strand, within IAI46_04380at 938.261 kb on + strand, within IAI46_04380at 938.261 kb on + strand, within IAI46_04380at 938.261 kb on + strand, within IAI46_04380at 938.362 kb on - strand, within IAI46_04380at 938.362 kb on - strand, within IAI46_04380at 938.583 kb on + strand, within IAI46_04380at 938.679 kb on + strand, within IAI46_04380at 938.680 kb on - strand, within IAI46_04380at 938.680 kb on - strand, within IAI46_04380at 938.717 kb on + strand, within IAI46_04380at 938.718 kb on - strand, within IAI46_04380at 938.724 kb on - strandat 938.753 kb on + strandat 938.753 kb on + strandat 938.753 kb on + strandat 938.754 kb on - strandat 938.754 kb on - strandat 938.779 kb on - strandat 938.805 kb on - strandat 938.848 kb on + strandat 938.963 kb on + strand, within IAI46_04385at 938.963 kb on + strand, within IAI46_04385at 938.963 kb on + strand, within IAI46_04385at 938.964 kb on - strand, within IAI46_04385at 939.083 kb on + strand, within IAI46_04385at 939.083 kb on + strand, within IAI46_04385at 939.083 kb on + strand, within IAI46_04385at 939.084 kb on - strand, within IAI46_04385at 939.230 kb on + strand, within IAI46_04385at 939.327 kb on + strand, within IAI46_04385at 939.327 kb on + strand, within IAI46_04385at 939.327 kb on + strand, within IAI46_04385at 939.328 kb on - strand, within IAI46_04385at 939.328 kb on - strand, within IAI46_04385at 939.355 kb on - strand, within IAI46_04385at 939.355 kb on - strand, within IAI46_04385at 939.461 kb on + strand, within IAI46_04385at 939.461 kb on + strand, within IAI46_04385at 939.461 kb on + strand, within IAI46_04385at 939.461 kb on + strand, within IAI46_04385at 939.462 kb on - strand, within IAI46_04385at 939.462 kb on - strand, within IAI46_04385at 939.462 kb on - strand, within IAI46_04385at 939.524 kb on + strand, within IAI46_04385at 939.525 kb on - strand, within IAI46_04385at 939.534 kb on + strand, within IAI46_04385at 939.534 kb on + strand, within IAI46_04385at 939.534 kb on + strand, within IAI46_04385at 939.534 kb on + strand, within IAI46_04385at 939.535 kb on - strand, within IAI46_04385at 939.536 kb on + strand, within IAI46_04385at 939.748 kb on - strand, within IAI46_04385at 939.748 kb on - strand, within IAI46_04385at 939.792 kb on - strand, within IAI46_04385at 939.830 kb on + strand, within IAI46_04385at 939.830 kb on + strand, within IAI46_04385at 939.844 kb on - strand, within IAI46_04385at 939.860 kb on + strand, within IAI46_04385at 939.861 kb on - strand, within IAI46_04385at 939.861 kb on - strand, within IAI46_04385at 939.861 kb on - strand, within IAI46_04385at 939.918 kb on + strandat 939.918 kb on + strandat 939.919 kb on - strandat 939.919 kb on - strandat 939.919 kb on - strandat 939.919 kb on - strandat 939.992 kb on + strandat 939.992 kb on + strandat 940.079 kb on - strandat 940.137 kb on + strand, within IAI46_04390at 940.150 kb on - strand, within IAI46_04390at 940.187 kb on - strand, within IAI46_04390at 940.240 kb on - strand, within IAI46_04390at 940.344 kb on - strand, within IAI46_04390at 940.533 kb on + strand, within IAI46_04390at 940.533 kb on + strand, within IAI46_04390at 940.533 kb on + strand, within IAI46_04390at 940.534 kb on - strand, within IAI46_04390at 940.757 kb on + strand, within IAI46_04390at 940.757 kb on + strand, within IAI46_04390at 940.757 kb on + strand, within IAI46_04390at 940.757 kb on + strand, within IAI46_04390at 940.757 kb on + strand, within IAI46_04390at 940.758 kb on - strand, within IAI46_04390at 940.779 kb on + strand, within IAI46_04390at 940.780 kb on - strand, within IAI46_04390at 940.811 kb on + strand, within IAI46_04390at 940.811 kb on + strand, within IAI46_04390at 940.811 kb on + strand, within IAI46_04390at 940.812 kb on - strand, within IAI46_04390at 940.814 kb on + strand, within IAI46_04390at 940.814 kb on + strand, within IAI46_04390at 940.815 kb on - strand, within IAI46_04390at 940.815 kb on - strand, within IAI46_04390at 940.815 kb on - strand, within IAI46_04390at 940.816 kb on + strand, within IAI46_04390at 940.817 kb on - strand, within IAI46_04390at 940.817 kb on - strand, within IAI46_04390at 940.817 kb on - strand, within IAI46_04390at 940.817 kb on - strand, within IAI46_04390at 940.817 kb on - strand, within IAI46_04390at 941.010 kb on + strandat 941.010 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
remove
937,824 + IAI46_04375 0.44 +0.2
937,825 - IAI46_04375 0.44 +1.2
937,883 + IAI46_04375 0.53 +0.6
937,908 + IAI46_04375 0.57 -0.4
937,909 - IAI46_04375 0.57 +0.7
937,909 - IAI46_04375 0.57 +1.2
937,909 - IAI46_04375 0.57 +0.4
937,909 - IAI46_04375 0.57 +0.6
938,071 - IAI46_04375 0.83 -0.3
938,114 + IAI46_04375 0.90 -0.8
938,193 + +0.5
938,193 + -0.5
938,194 - +1.3
938,194 - +0.4
938,194 - -0.1
938,194 - -0.7
938,194 - +0.4
938,195 + +0.4
938,196 - -0.4
938,196 - +0.0
938,261 + IAI46_04380 0.13 -0.1
938,261 + IAI46_04380 0.13 -0.8
938,261 + IAI46_04380 0.13 -1.0
938,261 + IAI46_04380 0.13 +0.6
938,362 - IAI46_04380 0.30 -0.3
938,362 - IAI46_04380 0.30 +1.6
938,583 + IAI46_04380 0.67 +0.6
938,679 + IAI46_04380 0.83 +1.0
938,680 - IAI46_04380 0.83 -0.0
938,680 - IAI46_04380 0.83 -0.2
938,717 + IAI46_04380 0.89 -0.2
938,718 - IAI46_04380 0.89 +0.0
938,724 - -0.8
938,753 + +1.0
938,753 + -0.3
938,753 + +0.8
938,754 - -1.1
938,754 - -0.4
938,779 - -0.3
938,805 - +1.0
938,848 + +0.5
938,963 + IAI46_04385 0.14 +0.5
938,963 + IAI46_04385 0.14 +0.2
938,963 + IAI46_04385 0.14 -1.4
938,964 - IAI46_04385 0.14 +0.3
939,083 + IAI46_04385 0.23 -0.7
939,083 + IAI46_04385 0.23 -1.0
939,083 + IAI46_04385 0.23 +0.6
939,084 - IAI46_04385 0.24 -0.0
939,230 + IAI46_04385 0.35 +0.0
939,327 + IAI46_04385 0.43 -0.2
939,327 + IAI46_04385 0.43 +0.8
939,327 + IAI46_04385 0.43 -0.2
939,328 - IAI46_04385 0.43 +0.8
939,328 - IAI46_04385 0.43 +0.4
939,355 - IAI46_04385 0.46 -0.6
939,355 - IAI46_04385 0.46 -0.8
939,461 + IAI46_04385 0.54 +2.0
939,461 + IAI46_04385 0.54 +0.2
939,461 + IAI46_04385 0.54 +0.1
939,461 + IAI46_04385 0.54 -0.3
939,462 - IAI46_04385 0.54 +0.5
939,462 - IAI46_04385 0.54 +0.8
939,462 - IAI46_04385 0.54 +0.7
939,524 + IAI46_04385 0.59 +0.5
939,525 - IAI46_04385 0.60 +0.3
939,534 + IAI46_04385 0.60 +0.6
939,534 + IAI46_04385 0.60 +2.3
939,534 + IAI46_04385 0.60 +1.1
939,534 + IAI46_04385 0.60 -0.2
939,535 - IAI46_04385 0.60 -0.8
939,536 + IAI46_04385 0.60 +0.9
939,748 - IAI46_04385 0.78 +0.6
939,748 - IAI46_04385 0.78 +0.9
939,792 - IAI46_04385 0.81 +0.8
939,830 + IAI46_04385 0.84 +0.9
939,830 + IAI46_04385 0.84 +0.2
939,844 - IAI46_04385 0.86 -0.5
939,860 + IAI46_04385 0.87 +0.5
939,861 - IAI46_04385 0.87 +1.4
939,861 - IAI46_04385 0.87 +0.2
939,861 - IAI46_04385 0.87 -0.4
939,918 + +0.8
939,918 + +0.1
939,919 - +0.6
939,919 - -0.5
939,919 - +0.8
939,919 - -0.0
939,992 + +0.5
939,992 + +1.1
940,079 - -0.5
940,137 + IAI46_04390 0.11 +0.3
940,150 - IAI46_04390 0.13 +0.5
940,187 - IAI46_04390 0.16 -0.1
940,240 - IAI46_04390 0.21 -0.3
940,344 - IAI46_04390 0.31 -0.0
940,533 + IAI46_04390 0.50 +0.0
940,533 + IAI46_04390 0.50 +0.5
940,533 + IAI46_04390 0.50 +0.5
940,534 - IAI46_04390 0.50 +0.4
940,757 + IAI46_04390 0.71 +0.4
940,757 + IAI46_04390 0.71 -0.3
940,757 + IAI46_04390 0.71 +0.5
940,757 + IAI46_04390 0.71 -0.9
940,757 + IAI46_04390 0.71 -0.2
940,758 - IAI46_04390 0.72 +0.8
940,779 + IAI46_04390 0.74 +0.7
940,780 - IAI46_04390 0.74 +0.3
940,811 + IAI46_04390 0.77 +0.5
940,811 + IAI46_04390 0.77 +0.1
940,811 + IAI46_04390 0.77 +0.4
940,812 - IAI46_04390 0.77 +0.0
940,814 + IAI46_04390 0.77 +0.7
940,814 + IAI46_04390 0.77 +1.0
940,815 - IAI46_04390 0.77 +0.4
940,815 - IAI46_04390 0.77 +0.5
940,815 - IAI46_04390 0.77 -0.2
940,816 + IAI46_04390 0.77 +0.1
940,817 - IAI46_04390 0.77 -0.7
940,817 - IAI46_04390 0.77 +0.6
940,817 - IAI46_04390 0.77 +0.9
940,817 - IAI46_04390 0.77 +0.8
940,817 - IAI46_04390 0.77 +1.4
941,010 + +0.3
941,010 + +0.1

Or see this region's nucleotide sequence