Strain Fitness in Serratia liquefaciens MT49 around IAI46_04260

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_04250 and IAI46_04255 are separated by 12 nucleotidesIAI46_04255 and IAI46_04260 overlap by 1 nucleotidesIAI46_04260 and IAI46_04265 overlap by 20 nucleotidesIAI46_04265 and IAI46_04270 are separated by 63 nucleotides IAI46_04250: IAI46_04250 - transporter substrate-binding domain-containing protein, at 914,206 to 914,997 _04250 IAI46_04255: IAI46_04255 - amino acid ABC transporter permease, at 915,010 to 915,675 _04255 IAI46_04260: IAI46_04260 - amino acid ABC transporter permease, at 915,675 to 916,331 _04260 IAI46_04265: IAI46_04265 - amino acid ABC transporter ATP-binding protein, at 916,312 to 917,055 _04265 IAI46_04270: IAI46_04270 - alanine--glyoxylate aminotransferase family protein, at 917,119 to 918,360 _04270 Position (kb) 915 916 917Strain fitness (log2 ratio) -2 -1 0 1 2at 914.710 kb on + strand, within IAI46_04250at 914.740 kb on + strand, within IAI46_04250at 914.761 kb on + strand, within IAI46_04250at 914.761 kb on + strand, within IAI46_04250at 914.761 kb on + strand, within IAI46_04250at 914.761 kb on + strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.762 kb on - strand, within IAI46_04250at 914.835 kb on + strand, within IAI46_04250at 914.835 kb on + strand, within IAI46_04250at 914.835 kb on + strand, within IAI46_04250at 914.836 kb on - strand, within IAI46_04250at 914.836 kb on - strand, within IAI46_04250at 914.934 kb on + strandat 915.016 kb on + strandat 915.016 kb on + strandat 915.016 kb on + strandat 915.017 kb on - strandat 915.017 kb on - strandat 915.017 kb on - strandat 915.047 kb on - strandat 915.075 kb on - strandat 915.187 kb on + strand, within IAI46_04255at 915.187 kb on + strand, within IAI46_04255at 915.188 kb on - strand, within IAI46_04255at 915.306 kb on + strand, within IAI46_04255at 915.334 kb on - strand, within IAI46_04255at 915.335 kb on + strand, within IAI46_04255at 915.397 kb on - strand, within IAI46_04255at 915.452 kb on - strand, within IAI46_04255at 915.580 kb on + strand, within IAI46_04255at 915.580 kb on + strand, within IAI46_04255at 915.580 kb on + strand, within IAI46_04255at 915.580 kb on + strand, within IAI46_04255at 915.585 kb on - strand, within IAI46_04255at 915.585 kb on - strand, within IAI46_04255at 915.602 kb on - strand, within IAI46_04255at 915.962 kb on + strand, within IAI46_04260at 915.963 kb on - strand, within IAI46_04260at 915.983 kb on + strand, within IAI46_04260at 915.984 kb on - strand, within IAI46_04260at 916.201 kb on + strand, within IAI46_04260at 916.215 kb on + strand, within IAI46_04260at 916.215 kb on + strand, within IAI46_04260at 916.216 kb on - strand, within IAI46_04260at 916.216 kb on - strand, within IAI46_04260at 916.226 kb on + strand, within IAI46_04260at 916.226 kb on + strand, within IAI46_04260at 916.284 kb on + strandat 916.293 kb on + strandat 916.294 kb on - strandat 916.329 kb on + strandat 916.330 kb on - strandat 916.580 kb on + strand, within IAI46_04265at 916.581 kb on - strand, within IAI46_04265at 916.712 kb on - strand, within IAI46_04265at 916.876 kb on - strand, within IAI46_04265at 917.056 kb on + strandat 917.056 kb on + strandat 917.057 kb on - strandat 917.096 kb on + strandat 917.096 kb on + strandat 917.097 kb on - strandat 917.099 kb on + strandat 917.100 kb on - strandat 917.100 kb on - strandat 917.100 kb on - strandat 917.107 kb on + strandat 917.108 kb on - strandat 917.115 kb on + strandat 917.128 kb on - strandat 917.148 kb on + strandat 917.220 kb on + strandat 917.220 kb on + strandat 917.239 kb on + strandat 917.240 kb on - strandat 917.240 kb on - strandat 917.260 kb on + strand, within IAI46_04270at 917.261 kb on - strand, within IAI46_04270at 917.262 kb on + strand, within IAI46_04270at 917.284 kb on + strand, within IAI46_04270

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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914,710 + IAI46_04250 0.64 -0.6
914,740 + IAI46_04250 0.67 +0.9
914,761 + IAI46_04250 0.70 +0.2
914,761 + IAI46_04250 0.70 +0.5
914,761 + IAI46_04250 0.70 -0.5
914,761 + IAI46_04250 0.70 -0.5
914,762 - IAI46_04250 0.70 -0.0
914,762 - IAI46_04250 0.70 -0.4
914,762 - IAI46_04250 0.70 -0.6
914,762 - IAI46_04250 0.70 +0.4
914,762 - IAI46_04250 0.70 -0.3
914,835 + IAI46_04250 0.79 +0.0
914,835 + IAI46_04250 0.79 -0.2
914,835 + IAI46_04250 0.79 +0.1
914,836 - IAI46_04250 0.80 -0.4
914,836 - IAI46_04250 0.80 -0.1
914,934 + +0.4
915,016 + +0.9
915,016 + +1.6
915,016 + +1.3
915,017 - +1.3
915,017 - -0.1
915,017 - +0.9
915,047 - +0.9
915,075 - +0.2
915,187 + IAI46_04255 0.27 -0.3
915,187 + IAI46_04255 0.27 +1.3
915,188 - IAI46_04255 0.27 +0.1
915,306 + IAI46_04255 0.44 +0.3
915,334 - IAI46_04255 0.49 -0.5
915,335 + IAI46_04255 0.49 +1.0
915,397 - IAI46_04255 0.58 +0.4
915,452 - IAI46_04255 0.66 -0.1
915,580 + IAI46_04255 0.86 +2.0
915,580 + IAI46_04255 0.86 +0.4
915,580 + IAI46_04255 0.86 +1.4
915,580 + IAI46_04255 0.86 -0.7
915,585 - IAI46_04255 0.86 +0.5
915,585 - IAI46_04255 0.86 -0.1
915,602 - IAI46_04255 0.89 +0.6
915,962 + IAI46_04260 0.44 +0.8
915,963 - IAI46_04260 0.44 -0.5
915,983 + IAI46_04260 0.47 +1.5
915,984 - IAI46_04260 0.47 -0.0
916,201 + IAI46_04260 0.80 +0.4
916,215 + IAI46_04260 0.82 +0.6
916,215 + IAI46_04260 0.82 +0.2
916,216 - IAI46_04260 0.82 +0.5
916,216 - IAI46_04260 0.82 +0.1
916,226 + IAI46_04260 0.84 -0.7
916,226 + IAI46_04260 0.84 -0.6
916,284 + -0.5
916,293 + -0.0
916,294 - +0.8
916,329 + +0.8
916,330 - +0.5
916,580 + IAI46_04265 0.36 -1.8
916,581 - IAI46_04265 0.36 +0.5
916,712 - IAI46_04265 0.54 +0.0
916,876 - IAI46_04265 0.76 +0.3
917,056 + +0.2
917,056 + +0.7
917,057 - -1.1
917,096 + -0.3
917,096 + +0.4
917,097 - -1.8
917,099 + +0.5
917,100 - +0.2
917,100 - +0.7
917,100 - +0.8
917,107 + +1.0
917,108 - -0.9
917,115 + +1.4
917,128 - -0.6
917,148 + -0.4
917,220 + -0.2
917,220 + +0.5
917,239 + +0.6
917,240 - -0.0
917,240 - -0.7
917,260 + IAI46_04270 0.11 +0.7
917,261 - IAI46_04270 0.11 -0.2
917,262 + IAI46_04270 0.12 -0.3
917,284 + IAI46_04270 0.13 +0.4

Or see this region's nucleotide sequence