Strain Fitness in Serratia liquefaciens MT49 around IAI46_02945

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_02940 and IAI46_02945 are separated by 65 nucleotidesIAI46_02945 and IAI46_02950 are separated by 56 nucleotides IAI46_02940: IAI46_02940 - phosphoserine phosphatase, at 626,474 to 627,451 _02940 IAI46_02945: IAI46_02945 - DNA repair protein RadA, at 627,517 to 628,902 _02945 IAI46_02950: IAI46_02950 - multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR, at 628,959 to 630,215 _02950 Position (kb) 627 628 629Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 626.599 kb on - strand, within IAI46_02940at 626.601 kb on + strand, within IAI46_02940at 626.601 kb on + strand, within IAI46_02940at 626.601 kb on + strand, within IAI46_02940at 626.601 kb on + strand, within IAI46_02940at 626.602 kb on - strand, within IAI46_02940at 626.602 kb on - strand, within IAI46_02940at 626.602 kb on - strand, within IAI46_02940at 626.602 kb on - strand, within IAI46_02940at 626.602 kb on - strand, within IAI46_02940at 626.602 kb on - strand, within IAI46_02940at 626.602 kb on - strand, within IAI46_02940at 626.604 kb on - strand, within IAI46_02940at 626.604 kb on - strand, within IAI46_02940at 626.604 kb on - strand, within IAI46_02940at 626.688 kb on + strand, within IAI46_02940at 626.696 kb on + strand, within IAI46_02940at 626.696 kb on + strand, within IAI46_02940at 626.697 kb on - strand, within IAI46_02940at 626.966 kb on - strand, within IAI46_02940at 627.101 kb on + strand, within IAI46_02940at 627.101 kb on + strand, within IAI46_02940at 627.101 kb on + strand, within IAI46_02940at 627.101 kb on + strand, within IAI46_02940at 627.102 kb on - strand, within IAI46_02940at 627.102 kb on - strand, within IAI46_02940at 627.102 kb on - strand, within IAI46_02940at 627.104 kb on + strand, within IAI46_02940at 627.113 kb on + strand, within IAI46_02940at 627.114 kb on - strand, within IAI46_02940at 627.342 kb on - strand, within IAI46_02940at 627.362 kb on + strandat 627.362 kb on + strandat 627.362 kb on + strandat 627.363 kb on - strandat 627.363 kb on - strandat 627.401 kb on - strandat 627.449 kb on + strandat 627.449 kb on + strandat 627.454 kb on + strandat 627.455 kb on - strandat 627.497 kb on + strandat 627.498 kb on - strandat 627.501 kb on - strandat 627.511 kb on + strandat 627.512 kb on - strandat 627.512 kb on - strandat 627.514 kb on + strandat 627.514 kb on + strandat 627.514 kb on + strandat 627.515 kb on - strandat 627.515 kb on - strandat 627.515 kb on - strandat 627.515 kb on - strandat 627.546 kb on - strandat 627.550 kb on - strandat 627.550 kb on - strandat 627.619 kb on - strandat 627.619 kb on - strandat 627.843 kb on + strand, within IAI46_02945at 627.844 kb on - strand, within IAI46_02945at 627.895 kb on + strand, within IAI46_02945at 627.895 kb on + strand, within IAI46_02945at 627.896 kb on - strand, within IAI46_02945at 627.896 kb on - strand, within IAI46_02945at 627.972 kb on + strand, within IAI46_02945at 627.972 kb on + strand, within IAI46_02945at 627.973 kb on - strand, within IAI46_02945at 628.107 kb on - strand, within IAI46_02945at 628.123 kb on + strand, within IAI46_02945at 628.124 kb on - strand, within IAI46_02945at 628.211 kb on + strand, within IAI46_02945at 628.211 kb on + strand, within IAI46_02945at 628.211 kb on + strand, within IAI46_02945at 628.212 kb on - strand, within IAI46_02945at 628.212 kb on - strand, within IAI46_02945at 628.272 kb on + strand, within IAI46_02945at 628.272 kb on + strand, within IAI46_02945at 628.273 kb on - strand, within IAI46_02945at 628.488 kb on + strand, within IAI46_02945at 628.901 kb on - strandat 628.901 kb on - strandat 629.054 kb on + strandat 629.054 kb on + strandat 629.054 kb on + strandat 629.054 kb on + strandat 629.055 kb on - strandat 629.203 kb on - strand, within IAI46_02950at 629.356 kb on - strand, within IAI46_02950at 629.372 kb on + strand, within IAI46_02950at 629.372 kb on + strand, within IAI46_02950at 629.373 kb on - strand, within IAI46_02950at 629.373 kb on - strand, within IAI46_02950at 629.406 kb on + strand, within IAI46_02950at 629.467 kb on + strand, within IAI46_02950at 629.468 kb on - strand, within IAI46_02950at 629.480 kb on + strand, within IAI46_02950at 629.480 kb on + strand, within IAI46_02950at 629.480 kb on + strand, within IAI46_02950at 629.480 kb on + strand, within IAI46_02950at 629.481 kb on - strand, within IAI46_02950at 629.481 kb on - strand, within IAI46_02950at 629.481 kb on - strand, within IAI46_02950at 629.485 kb on - strand, within IAI46_02950at 629.567 kb on + strand, within IAI46_02950at 629.568 kb on - strand, within IAI46_02950at 629.611 kb on - strand, within IAI46_02950at 629.619 kb on + strand, within IAI46_02950at 629.620 kb on - strand, within IAI46_02950at 629.620 kb on - strand, within IAI46_02950at 629.620 kb on - strand, within IAI46_02950at 629.620 kb on - strand, within IAI46_02950at 629.621 kb on + strand, within IAI46_02950at 629.622 kb on - strand, within IAI46_02950at 629.622 kb on - strand, within IAI46_02950at 629.622 kb on - strand, within IAI46_02950at 629.705 kb on + strand, within IAI46_02950at 629.706 kb on - strand, within IAI46_02950at 629.746 kb on - strand, within IAI46_02950at 629.757 kb on + strand, within IAI46_02950at 629.758 kb on - strand, within IAI46_02950at 629.794 kb on + strand, within IAI46_02950at 629.795 kb on - strand, within IAI46_02950at 629.795 kb on - strand, within IAI46_02950at 629.799 kb on + strand, within IAI46_02950at 629.799 kb on + strand, within IAI46_02950at 629.808 kb on + strand, within IAI46_02950at 629.839 kb on - strand, within IAI46_02950at 629.867 kb on + strand, within IAI46_02950at 629.868 kb on - strand, within IAI46_02950

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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626,599 - IAI46_02940 0.13 -1.7
626,601 + IAI46_02940 0.13 -2.5
626,601 + IAI46_02940 0.13 -1.8
626,601 + IAI46_02940 0.13 -1.9
626,601 + IAI46_02940 0.13 -1.9
626,602 - IAI46_02940 0.13 -1.1
626,602 - IAI46_02940 0.13 -1.0
626,602 - IAI46_02940 0.13 -0.2
626,602 - IAI46_02940 0.13 -1.2
626,602 - IAI46_02940 0.13 -1.8
626,602 - IAI46_02940 0.13 -1.0
626,602 - IAI46_02940 0.13 -1.3
626,604 - IAI46_02940 0.13 -3.2
626,604 - IAI46_02940 0.13 -2.4
626,604 - IAI46_02940 0.13 -2.8
626,688 + IAI46_02940 0.22 -2.8
626,696 + IAI46_02940 0.23 -1.7
626,696 + IAI46_02940 0.23 -2.2
626,697 - IAI46_02940 0.23 -1.4
626,966 - IAI46_02940 0.50 -2.9
627,101 + IAI46_02940 0.64 -0.7
627,101 + IAI46_02940 0.64 -2.5
627,101 + IAI46_02940 0.64 -1.9
627,101 + IAI46_02940 0.64 -0.9
627,102 - IAI46_02940 0.64 -3.1
627,102 - IAI46_02940 0.64 -1.3
627,102 - IAI46_02940 0.64 -1.0
627,104 + IAI46_02940 0.64 -1.0
627,113 + IAI46_02940 0.65 -1.1
627,114 - IAI46_02940 0.65 -3.1
627,342 - IAI46_02940 0.89 -2.2
627,362 + -1.1
627,362 + -2.7
627,362 + -2.2
627,363 - -1.6
627,363 - -0.5
627,401 - -1.3
627,449 + -0.5
627,449 + -0.5
627,454 + -0.1
627,455 - -0.2
627,497 + +0.4
627,498 - -1.0
627,501 - +0.0
627,511 + -0.2
627,512 - +0.2
627,512 - -0.6
627,514 + +0.7
627,514 + +0.9
627,514 + +0.2
627,515 - +0.2
627,515 - +0.2
627,515 - -0.6
627,515 - -0.0
627,546 - -0.6
627,550 - -0.2
627,550 - +0.6
627,619 - -0.4
627,619 - +0.2
627,843 + IAI46_02945 0.24 -0.5
627,844 - IAI46_02945 0.24 +0.0
627,895 + IAI46_02945 0.27 +0.2
627,895 + IAI46_02945 0.27 +0.0
627,896 - IAI46_02945 0.27 +0.1
627,896 - IAI46_02945 0.27 -1.0
627,972 + IAI46_02945 0.33 +0.3
627,972 + IAI46_02945 0.33 -0.4
627,973 - IAI46_02945 0.33 +0.2
628,107 - IAI46_02945 0.43 +0.3
628,123 + IAI46_02945 0.44 -0.6
628,124 - IAI46_02945 0.44 -0.4
628,211 + IAI46_02945 0.50 -0.1
628,211 + IAI46_02945 0.50 +0.4
628,211 + IAI46_02945 0.50 -0.1
628,212 - IAI46_02945 0.50 +0.2
628,212 - IAI46_02945 0.50 -0.4
628,272 + IAI46_02945 0.54 -0.0
628,272 + IAI46_02945 0.54 +0.2
628,273 - IAI46_02945 0.55 -1.1
628,488 + IAI46_02945 0.70 +0.5
628,901 - +0.2
628,901 - +0.3
629,054 + -0.0
629,054 + +0.2
629,054 + -0.0
629,054 + +0.4
629,055 - -1.8
629,203 - IAI46_02950 0.19 +0.7
629,356 - IAI46_02950 0.32 +0.7
629,372 + IAI46_02950 0.33 -0.3
629,372 + IAI46_02950 0.33 +0.7
629,373 - IAI46_02950 0.33 +0.3
629,373 - IAI46_02950 0.33 +0.1
629,406 + IAI46_02950 0.36 +1.3
629,467 + IAI46_02950 0.40 +0.4
629,468 - IAI46_02950 0.40 +0.4
629,480 + IAI46_02950 0.41 +0.4
629,480 + IAI46_02950 0.41 -0.1
629,480 + IAI46_02950 0.41 +1.2
629,480 + IAI46_02950 0.41 +0.1
629,481 - IAI46_02950 0.42 -0.1
629,481 - IAI46_02950 0.42 +0.2
629,481 - IAI46_02950 0.42 +1.2
629,485 - IAI46_02950 0.42 +0.2
629,567 + IAI46_02950 0.48 +0.2
629,568 - IAI46_02950 0.48 +0.2
629,611 - IAI46_02950 0.52 +1.1
629,619 + IAI46_02950 0.53 -0.2
629,620 - IAI46_02950 0.53 +0.0
629,620 - IAI46_02950 0.53 +0.6
629,620 - IAI46_02950 0.53 +1.0
629,620 - IAI46_02950 0.53 +1.9
629,621 + IAI46_02950 0.53 +0.2
629,622 - IAI46_02950 0.53 +0.5
629,622 - IAI46_02950 0.53 -1.2
629,622 - IAI46_02950 0.53 +0.2
629,705 + IAI46_02950 0.59 -0.3
629,706 - IAI46_02950 0.59 -0.1
629,746 - IAI46_02950 0.63 +1.1
629,757 + IAI46_02950 0.63 +0.4
629,758 - IAI46_02950 0.64 +0.6
629,794 + IAI46_02950 0.66 +0.3
629,795 - IAI46_02950 0.67 +0.1
629,795 - IAI46_02950 0.67 -0.1
629,799 + IAI46_02950 0.67 +1.0
629,799 + IAI46_02950 0.67 -0.3
629,808 + IAI46_02950 0.68 +1.3
629,839 - IAI46_02950 0.70 -0.1
629,867 + IAI46_02950 0.72 -0.5
629,868 - IAI46_02950 0.72 +0.2

Or see this region's nucleotide sequence