Strain Fitness in Serratia liquefaciens MT49 around IAI46_01775

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01770 and IAI46_01775 overlap by 4 nucleotidesIAI46_01775 and IAI46_01780 are separated by 2 nucleotidesIAI46_01780 and IAI46_01785 are separated by 52 nucleotides IAI46_01770: IAI46_01770 - outer membrane protein assembly factor, at 382,307 to 384,043 _01770 IAI46_01775: IAI46_01775 - translocation/assembly module TamB, at 384,040 to 387,858 _01775 IAI46_01780: IAI46_01780 - gamma-glutamylcyclotransferase, at 387,861 to 388,208 _01780 IAI46_01785: IAI46_01785 - inorganic diphosphatase, at 388,261 to 388,791 _01785 Position (kb) 384 385 386 387 388Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 383.076 kb on + strand, within IAI46_01770at 383.182 kb on + strand, within IAI46_01770at 383.252 kb on + strand, within IAI46_01770at 383.253 kb on - strand, within IAI46_01770at 383.253 kb on - strand, within IAI46_01770at 383.253 kb on - strand, within IAI46_01770at 383.254 kb on + strand, within IAI46_01770at 383.254 kb on + strand, within IAI46_01770at 383.255 kb on - strand, within IAI46_01770at 383.289 kb on - strand, within IAI46_01770at 383.289 kb on - strand, within IAI46_01770at 383.289 kb on - strand, within IAI46_01770at 383.291 kb on + strand, within IAI46_01770at 383.291 kb on + strand, within IAI46_01770at 383.291 kb on + strand, within IAI46_01770at 383.292 kb on - strand, within IAI46_01770at 383.292 kb on - strand, within IAI46_01770at 383.292 kb on - strand, within IAI46_01770at 383.292 kb on - strand, within IAI46_01770at 383.292 kb on - strand, within IAI46_01770at 383.333 kb on - strand, within IAI46_01770at 383.401 kb on + strand, within IAI46_01770at 383.405 kb on - strand, within IAI46_01770at 383.405 kb on - strand, within IAI46_01770at 383.405 kb on - strand, within IAI46_01770at 383.431 kb on + strand, within IAI46_01770at 383.431 kb on + strand, within IAI46_01770at 383.432 kb on - strand, within IAI46_01770at 383.452 kb on + strand, within IAI46_01770at 383.452 kb on + strand, within IAI46_01770at 383.452 kb on + strand, within IAI46_01770at 383.453 kb on - strand, within IAI46_01770at 383.453 kb on - strand, within IAI46_01770at 383.468 kb on + strand, within IAI46_01770at 383.540 kb on + strand, within IAI46_01770at 383.540 kb on + strand, within IAI46_01770at 383.541 kb on - strand, within IAI46_01770at 383.541 kb on - strand, within IAI46_01770at 383.744 kb on + strand, within IAI46_01770at 383.744 kb on + strand, within IAI46_01770at 383.745 kb on - strand, within IAI46_01770at 383.745 kb on - strand, within IAI46_01770at 383.745 kb on - strand, within IAI46_01770at 383.751 kb on - strand, within IAI46_01770at 383.825 kb on + strand, within IAI46_01770at 383.826 kb on - strand, within IAI46_01770at 383.831 kb on + strand, within IAI46_01770at 383.831 kb on + strand, within IAI46_01770at 383.831 kb on + strand, within IAI46_01770at 383.831 kb on + strand, within IAI46_01770at 383.831 kb on + strand, within IAI46_01770at 383.831 kb on + strand, within IAI46_01770at 383.832 kb on - strand, within IAI46_01770at 383.928 kb on + strandat 383.929 kb on - strandat 383.934 kb on + strandat 383.935 kb on - strandat 384.018 kb on - strandat 384.018 kb on - strandat 384.039 kb on + strandat 384.039 kb on + strandat 384.040 kb on - strandat 384.040 kb on - strandat 384.040 kb on - strandat 384.040 kb on - strandat 384.109 kb on + strandat 384.109 kb on + strandat 384.109 kb on + strandat 384.109 kb on + strandat 384.138 kb on + strandat 384.138 kb on + strandat 384.138 kb on + strandat 384.139 kb on - strandat 384.139 kb on - strandat 384.139 kb on - strandat 384.139 kb on - strandat 384.139 kb on - strandat 384.218 kb on + strandat 384.232 kb on + strandat 384.432 kb on + strand, within IAI46_01775at 384.433 kb on - strand, within IAI46_01775at 384.433 kb on - strand, within IAI46_01775at 384.435 kb on + strand, within IAI46_01775at 384.435 kb on + strand, within IAI46_01775at 384.436 kb on - strand, within IAI46_01775at 384.436 kb on - strand, within IAI46_01775at 384.436 kb on - strand, within IAI46_01775at 384.436 kb on - strand, within IAI46_01775at 384.436 kb on - strand, within IAI46_01775at 384.436 kb on - strand, within IAI46_01775at 384.444 kb on + strand, within IAI46_01775at 384.444 kb on + strand, within IAI46_01775at 384.444 kb on + strand, within IAI46_01775at 384.444 kb on + strand, within IAI46_01775at 384.445 kb on - strand, within IAI46_01775at 384.445 kb on - strand, within IAI46_01775at 384.465 kb on + strand, within IAI46_01775at 384.466 kb on - strand, within IAI46_01775at 384.477 kb on - strand, within IAI46_01775at 384.617 kb on + strand, within IAI46_01775at 384.617 kb on + strand, within IAI46_01775at 384.840 kb on + strand, within IAI46_01775at 384.841 kb on - strand, within IAI46_01775at 384.879 kb on + strand, within IAI46_01775at 384.880 kb on - strand, within IAI46_01775at 384.994 kb on - strand, within IAI46_01775at 385.056 kb on + strand, within IAI46_01775at 385.056 kb on + strand, within IAI46_01775at 385.057 kb on - strand, within IAI46_01775at 385.057 kb on - strand, within IAI46_01775at 385.103 kb on + strand, within IAI46_01775at 385.104 kb on - strand, within IAI46_01775at 385.104 kb on - strand, within IAI46_01775at 385.104 kb on - strand, within IAI46_01775at 385.104 kb on - strand, within IAI46_01775at 385.240 kb on + strand, within IAI46_01775at 385.240 kb on + strand, within IAI46_01775at 385.241 kb on - strand, within IAI46_01775at 385.241 kb on - strand, within IAI46_01775at 385.241 kb on - strand, within IAI46_01775at 385.309 kb on - strand, within IAI46_01775at 385.495 kb on - strand, within IAI46_01775at 385.557 kb on + strand, within IAI46_01775at 385.932 kb on + strand, within IAI46_01775at 386.097 kb on + strand, within IAI46_01775at 386.229 kb on + strand, within IAI46_01775at 386.229 kb on + strand, within IAI46_01775at 386.358 kb on - strand, within IAI46_01775at 386.358 kb on - strand, within IAI46_01775at 386.478 kb on + strand, within IAI46_01775at 386.478 kb on + strand, within IAI46_01775at 386.479 kb on - strand, within IAI46_01775at 386.536 kb on - strand, within IAI46_01775at 386.558 kb on + strand, within IAI46_01775at 386.559 kb on - strand, within IAI46_01775at 386.559 kb on - strand, within IAI46_01775at 386.559 kb on - strand, within IAI46_01775at 386.579 kb on + strand, within IAI46_01775at 386.579 kb on + strand, within IAI46_01775at 386.580 kb on - strand, within IAI46_01775at 386.589 kb on + strand, within IAI46_01775at 386.589 kb on + strand, within IAI46_01775at 386.590 kb on - strand, within IAI46_01775at 386.607 kb on + strand, within IAI46_01775at 386.608 kb on - strand, within IAI46_01775at 386.608 kb on - strand, within IAI46_01775at 386.608 kb on - strand, within IAI46_01775at 386.743 kb on - strand, within IAI46_01775at 386.752 kb on - strand, within IAI46_01775at 386.753 kb on + strand, within IAI46_01775at 386.753 kb on + strand, within IAI46_01775at 386.753 kb on + strand, within IAI46_01775at 386.753 kb on + strand, within IAI46_01775at 386.753 kb on + strand, within IAI46_01775at 386.753 kb on + strand, within IAI46_01775at 386.753 kb on + strand, within IAI46_01775at 386.753 kb on + strand, within IAI46_01775at 386.753 kb on + strand, within IAI46_01775at 386.753 kb on + strand, within IAI46_01775at 386.753 kb on + strand, within IAI46_01775at 386.753 kb on + strand, within IAI46_01775at 386.754 kb on - strand, within IAI46_01775at 386.754 kb on - strand, within IAI46_01775at 386.754 kb on - strand, within IAI46_01775at 386.754 kb on - strand, within IAI46_01775at 386.754 kb on - strand, within IAI46_01775at 386.754 kb on - strand, within IAI46_01775at 386.754 kb on - strand, within IAI46_01775at 386.862 kb on + strand, within IAI46_01775at 386.863 kb on - strand, within IAI46_01775at 386.863 kb on - strand, within IAI46_01775at 386.913 kb on + strand, within IAI46_01775at 386.914 kb on - strand, within IAI46_01775at 386.914 kb on - strand, within IAI46_01775at 386.932 kb on - strand, within IAI46_01775at 387.052 kb on - strand, within IAI46_01775at 387.212 kb on + strand, within IAI46_01775at 387.310 kb on + strand, within IAI46_01775at 387.310 kb on + strand, within IAI46_01775at 387.310 kb on + strand, within IAI46_01775at 387.310 kb on + strand, within IAI46_01775at 387.311 kb on - strand, within IAI46_01775at 387.381 kb on + strand, within IAI46_01775at 387.382 kb on - strand, within IAI46_01775at 387.382 kb on - strand, within IAI46_01775at 387.397 kb on - strand, within IAI46_01775at 387.514 kb on + strandat 387.515 kb on - strandat 387.558 kb on + strandat 387.559 kb on - strandat 387.579 kb on - strandat 387.641 kb on + strandat 387.642 kb on - strandat 387.660 kb on + strandat 387.703 kb on + strandat 387.703 kb on + strandat 387.719 kb on + strandat 387.719 kb on + strandat 387.720 kb on - strandat 387.720 kb on - strandat 387.725 kb on + strandat 387.726 kb on - strandat 387.789 kb on + strandat 387.790 kb on - strandat 387.790 kb on - strandat 387.796 kb on + strandat 387.869 kb on - strandat 387.886 kb on + strandat 388.013 kb on - strand, within IAI46_01780at 388.027 kb on - strand, within IAI46_01780at 388.086 kb on + strand, within IAI46_01780at 388.087 kb on - strand, within IAI46_01780at 388.088 kb on + strand, within IAI46_01780at 388.088 kb on + strand, within IAI46_01780at 388.089 kb on - strand, within IAI46_01780at 388.089 kb on - strand, within IAI46_01780at 388.131 kb on + strand, within IAI46_01780at 388.140 kb on - strand, within IAI46_01780at 388.140 kb on - strand, within IAI46_01780at 388.140 kb on - strand, within IAI46_01780at 388.140 kb on - strand, within IAI46_01780at 388.169 kb on + strand, within IAI46_01780at 388.241 kb on + strandat 388.262 kb on + strandat 388.262 kb on + strandat 388.263 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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383,076 + IAI46_01770 0.44 +0.1
383,182 + IAI46_01770 0.50 +1.1
383,252 + IAI46_01770 0.54 -0.3
383,253 - IAI46_01770 0.54 -0.3
383,253 - IAI46_01770 0.54 -0.6
383,253 - IAI46_01770 0.54 -0.4
383,254 + IAI46_01770 0.55 +0.0
383,254 + IAI46_01770 0.55 +0.6
383,255 - IAI46_01770 0.55 -0.6
383,289 - IAI46_01770 0.57 +0.1
383,289 - IAI46_01770 0.57 -0.1
383,289 - IAI46_01770 0.57 -0.4
383,291 + IAI46_01770 0.57 +0.4
383,291 + IAI46_01770 0.57 -0.3
383,291 + IAI46_01770 0.57 -2.0
383,292 - IAI46_01770 0.57 +0.6
383,292 - IAI46_01770 0.57 -0.5
383,292 - IAI46_01770 0.57 -0.3
383,292 - IAI46_01770 0.57 +0.7
383,292 - IAI46_01770 0.57 -0.2
383,333 - IAI46_01770 0.59 +1.3
383,401 + IAI46_01770 0.63 -1.2
383,405 - IAI46_01770 0.63 +0.4
383,405 - IAI46_01770 0.63 +0.2
383,405 - IAI46_01770 0.63 -0.2
383,431 + IAI46_01770 0.65 +0.0
383,431 + IAI46_01770 0.65 +0.8
383,432 - IAI46_01770 0.65 -0.9
383,452 + IAI46_01770 0.66 -0.9
383,452 + IAI46_01770 0.66 +0.2
383,452 + IAI46_01770 0.66 +0.0
383,453 - IAI46_01770 0.66 -0.0
383,453 - IAI46_01770 0.66 +0.0
383,468 + IAI46_01770 0.67 -0.1
383,540 + IAI46_01770 0.71 -0.0
383,540 + IAI46_01770 0.71 +0.6
383,541 - IAI46_01770 0.71 -0.7
383,541 - IAI46_01770 0.71 -1.4
383,744 + IAI46_01770 0.83 +0.2
383,744 + IAI46_01770 0.83 -0.1
383,745 - IAI46_01770 0.83 +0.5
383,745 - IAI46_01770 0.83 -0.3
383,745 - IAI46_01770 0.83 +0.1
383,751 - IAI46_01770 0.83 -0.3
383,825 + IAI46_01770 0.87 -0.3
383,826 - IAI46_01770 0.87 -0.4
383,831 + IAI46_01770 0.88 +0.5
383,831 + IAI46_01770 0.88 +0.3
383,831 + IAI46_01770 0.88 +0.4
383,831 + IAI46_01770 0.88 -0.4
383,831 + IAI46_01770 0.88 +0.2
383,831 + IAI46_01770 0.88 -1.1
383,832 - IAI46_01770 0.88 +0.3
383,928 + +0.2
383,929 - -0.8
383,934 + -0.7
383,935 - -0.9
384,018 - -0.4
384,018 - -0.2
384,039 + -0.3
384,039 + +0.5
384,040 - +0.2
384,040 - -0.2
384,040 - +1.3
384,040 - -0.9
384,109 + -0.9
384,109 + +0.5
384,109 + +1.1
384,109 + +0.7
384,138 + -0.6
384,138 + -0.3
384,138 + +0.2
384,139 - -0.6
384,139 - -1.9
384,139 - +0.2
384,139 - -0.2
384,139 - -0.2
384,218 + +1.2
384,232 + -0.1
384,432 + IAI46_01775 0.10 -0.0
384,433 - IAI46_01775 0.10 +0.2
384,433 - IAI46_01775 0.10 +0.6
384,435 + IAI46_01775 0.10 -0.1
384,435 + IAI46_01775 0.10 -0.3
384,436 - IAI46_01775 0.10 -0.2
384,436 - IAI46_01775 0.10 -0.5
384,436 - IAI46_01775 0.10 +0.0
384,436 - IAI46_01775 0.10 +0.4
384,436 - IAI46_01775 0.10 +0.2
384,436 - IAI46_01775 0.10 +0.1
384,444 + IAI46_01775 0.11 -3.9
384,444 + IAI46_01775 0.11 +1.1
384,444 + IAI46_01775 0.11 +0.4
384,444 + IAI46_01775 0.11 +0.0
384,445 - IAI46_01775 0.11 -0.2
384,445 - IAI46_01775 0.11 +0.7
384,465 + IAI46_01775 0.11 -0.7
384,466 - IAI46_01775 0.11 -0.3
384,477 - IAI46_01775 0.11 +0.1
384,617 + IAI46_01775 0.15 -0.4
384,617 + IAI46_01775 0.15 -0.5
384,840 + IAI46_01775 0.21 +0.9
384,841 - IAI46_01775 0.21 -1.5
384,879 + IAI46_01775 0.22 +0.6
384,880 - IAI46_01775 0.22 -0.0
384,994 - IAI46_01775 0.25 -0.4
385,056 + IAI46_01775 0.27 +0.2
385,056 + IAI46_01775 0.27 -1.0
385,057 - IAI46_01775 0.27 -0.1
385,057 - IAI46_01775 0.27 +0.3
385,103 + IAI46_01775 0.28 -0.2
385,104 - IAI46_01775 0.28 -0.3
385,104 - IAI46_01775 0.28 -0.5
385,104 - IAI46_01775 0.28 -1.0
385,104 - IAI46_01775 0.28 -0.0
385,240 + IAI46_01775 0.31 -0.2
385,240 + IAI46_01775 0.31 +0.4
385,241 - IAI46_01775 0.31 -1.0
385,241 - IAI46_01775 0.31 -0.4
385,241 - IAI46_01775 0.31 +0.0
385,309 - IAI46_01775 0.33 +0.1
385,495 - IAI46_01775 0.38 -0.6
385,557 + IAI46_01775 0.40 +0.1
385,932 + IAI46_01775 0.50 +0.8
386,097 + IAI46_01775 0.54 -0.3
386,229 + IAI46_01775 0.57 -0.3
386,229 + IAI46_01775 0.57 -0.2
386,358 - IAI46_01775 0.61 -0.3
386,358 - IAI46_01775 0.61 +0.2
386,478 + IAI46_01775 0.64 -0.7
386,478 + IAI46_01775 0.64 +1.3
386,479 - IAI46_01775 0.64 -0.3
386,536 - IAI46_01775 0.65 +0.0
386,558 + IAI46_01775 0.66 +0.0
386,559 - IAI46_01775 0.66 -0.5
386,559 - IAI46_01775 0.66 -0.4
386,559 - IAI46_01775 0.66 +0.3
386,579 + IAI46_01775 0.66 -0.2
386,579 + IAI46_01775 0.66 -0.3
386,580 - IAI46_01775 0.67 +0.9
386,589 + IAI46_01775 0.67 -0.2
386,589 + IAI46_01775 0.67 -0.1
386,590 - IAI46_01775 0.67 -0.0
386,607 + IAI46_01775 0.67 +0.4
386,608 - IAI46_01775 0.67 -0.1
386,608 - IAI46_01775 0.67 -0.3
386,608 - IAI46_01775 0.67 -1.0
386,743 - IAI46_01775 0.71 -0.4
386,752 - IAI46_01775 0.71 +0.9
386,753 + IAI46_01775 0.71 +0.3
386,753 + IAI46_01775 0.71 +0.0
386,753 + IAI46_01775 0.71 -0.1
386,753 + IAI46_01775 0.71 -0.3
386,753 + IAI46_01775 0.71 +0.2
386,753 + IAI46_01775 0.71 +0.0
386,753 + IAI46_01775 0.71 +0.2
386,753 + IAI46_01775 0.71 +0.4
386,753 + IAI46_01775 0.71 +0.1
386,753 + IAI46_01775 0.71 -1.3
386,753 + IAI46_01775 0.71 -0.7
386,753 + IAI46_01775 0.71 -0.9
386,754 - IAI46_01775 0.71 -0.7
386,754 - IAI46_01775 0.71 -0.1
386,754 - IAI46_01775 0.71 +0.4
386,754 - IAI46_01775 0.71 +0.4
386,754 - IAI46_01775 0.71 -0.7
386,754 - IAI46_01775 0.71 -0.6
386,754 - IAI46_01775 0.71 -1.5
386,862 + IAI46_01775 0.74 -0.7
386,863 - IAI46_01775 0.74 -0.5
386,863 - IAI46_01775 0.74 -0.5
386,913 + IAI46_01775 0.75 -1.1
386,914 - IAI46_01775 0.75 -0.6
386,914 - IAI46_01775 0.75 -0.6
386,932 - IAI46_01775 0.76 +0.2
387,052 - IAI46_01775 0.79 -0.2
387,212 + IAI46_01775 0.83 -0.1
387,310 + IAI46_01775 0.86 +0.6
387,310 + IAI46_01775 0.86 -0.3
387,310 + IAI46_01775 0.86 +0.1
387,310 + IAI46_01775 0.86 -0.0
387,311 - IAI46_01775 0.86 -0.1
387,381 + IAI46_01775 0.87 +0.2
387,382 - IAI46_01775 0.88 +0.4
387,382 - IAI46_01775 0.88 -0.2
387,397 - IAI46_01775 0.88 -2.6
387,514 + -0.1
387,515 - -0.4
387,558 + +0.2
387,559 - -0.0
387,579 - -0.7
387,641 + +0.5
387,642 - -0.8
387,660 + -0.8
387,703 + +0.5
387,703 + +0.4
387,719 + +0.1
387,719 + +0.2
387,720 - -0.4
387,720 - -1.1
387,725 + +0.4
387,726 - +0.2
387,789 + -0.3
387,790 - -0.7
387,790 - +0.2
387,796 + -0.6
387,869 - +0.7
387,886 + +1.3
388,013 - IAI46_01780 0.44 +0.3
388,027 - IAI46_01780 0.48 +1.4
388,086 + IAI46_01780 0.65 +0.6
388,087 - IAI46_01780 0.65 +0.2
388,088 + IAI46_01780 0.65 +1.0
388,088 + IAI46_01780 0.65 +0.9
388,089 - IAI46_01780 0.66 +0.5
388,089 - IAI46_01780 0.66 -0.2
388,131 + IAI46_01780 0.78 +1.1
388,140 - IAI46_01780 0.80 +0.4
388,140 - IAI46_01780 0.80 +1.0
388,140 - IAI46_01780 0.80 +0.8
388,140 - IAI46_01780 0.80 +0.7
388,169 + IAI46_01780 0.89 +0.8
388,241 + -0.4
388,262 + +1.6
388,262 + +1.6
388,263 - +0.9

Or see this region's nucleotide sequence