Strain Fitness in Serratia liquefaciens MT49 around IAI46_01350

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01340 and IAI46_01345 are separated by 48 nucleotidesIAI46_01345 and IAI46_01350 are separated by 188 nucleotidesIAI46_01350 and IAI46_01355 are separated by 69 nucleotidesIAI46_01355 and IAI46_01360 are separated by 45 nucleotides IAI46_01340: IAI46_01340 - deoxyribonuclease V, at 294,534 to 295,220 _01340 IAI46_01345: IAI46_01345 - YjaG family protein, at 295,269 to 295,859 _01345 IAI46_01350: IAI46_01350 - DNA-binding protein HU-alpha, at 296,048 to 296,320 _01350 IAI46_01355: IAI46_01355 - DUF1481 domain-containing protein, at 296,390 to 297,028 _01355 IAI46_01360: IAI46_01360 - phosphoribosylamine--glycine ligase, at 297,074 to 298,357 _01360 Position (kb) 296 297Strain fitness (log2 ratio) -3 -2 -1 0 1at 295.055 kb on + strand, within IAI46_01340at 295.055 kb on + strand, within IAI46_01340at 295.056 kb on - strand, within IAI46_01340at 295.061 kb on + strand, within IAI46_01340at 295.102 kb on + strand, within IAI46_01340at 295.102 kb on + strand, within IAI46_01340at 295.256 kb on - strandat 295.267 kb on + strandat 295.268 kb on - strandat 295.268 kb on - strandat 295.268 kb on - strandat 295.268 kb on - strandat 295.268 kb on - strandat 295.273 kb on + strandat 295.277 kb on + strandat 295.331 kb on + strand, within IAI46_01345at 295.332 kb on - strand, within IAI46_01345at 295.332 kb on - strand, within IAI46_01345at 295.332 kb on - strand, within IAI46_01345at 295.352 kb on + strand, within IAI46_01345at 295.352 kb on + strand, within IAI46_01345at 295.353 kb on - strand, within IAI46_01345at 295.356 kb on + strand, within IAI46_01345at 295.357 kb on - strand, within IAI46_01345at 295.410 kb on + strand, within IAI46_01345at 295.559 kb on + strand, within IAI46_01345at 295.559 kb on + strand, within IAI46_01345at 295.559 kb on + strand, within IAI46_01345at 295.559 kb on + strand, within IAI46_01345at 295.559 kb on + strand, within IAI46_01345at 295.560 kb on - strand, within IAI46_01345at 295.567 kb on + strand, within IAI46_01345at 295.832 kb on + strandat 295.832 kb on + strandat 295.833 kb on - strandat 295.857 kb on + strandat 295.857 kb on + strandat 295.858 kb on - strandat 295.878 kb on - strandat 295.878 kb on - strandat 295.899 kb on + strandat 295.899 kb on + strandat 295.969 kb on + strandat 295.969 kb on + strandat 295.969 kb on + strandat 295.970 kb on - strandat 296.025 kb on + strandat 296.026 kb on - strandat 296.036 kb on + strandat 296.036 kb on + strandat 296.036 kb on + strandat 296.037 kb on - strandat 296.037 kb on - strandat 296.037 kb on - strandat 296.037 kb on - strandat 296.042 kb on + strandat 296.047 kb on + strandat 296.048 kb on - strandat 296.048 kb on - strandat 296.048 kb on - strandat 296.073 kb on + strandat 296.073 kb on + strandat 296.110 kb on + strand, within IAI46_01350at 296.140 kb on + strand, within IAI46_01350at 296.143 kb on + strand, within IAI46_01350at 296.144 kb on - strand, within IAI46_01350at 296.144 kb on - strand, within IAI46_01350at 296.144 kb on - strand, within IAI46_01350at 296.172 kb on + strand, within IAI46_01350at 296.246 kb on - strand, within IAI46_01350at 296.270 kb on - strand, within IAI46_01350at 296.271 kb on - strand, within IAI46_01350at 296.318 kb on + strandat 296.321 kb on + strandat 296.322 kb on - strandat 296.322 kb on - strandat 296.344 kb on - strandat 296.486 kb on - strand, within IAI46_01355at 296.543 kb on + strand, within IAI46_01355at 296.544 kb on - strand, within IAI46_01355at 296.583 kb on - strand, within IAI46_01355at 296.614 kb on + strand, within IAI46_01355at 296.647 kb on + strand, within IAI46_01355at 296.648 kb on - strand, within IAI46_01355at 296.679 kb on + strand, within IAI46_01355at 296.680 kb on - strand, within IAI46_01355at 296.680 kb on - strand, within IAI46_01355at 296.686 kb on + strand, within IAI46_01355at 296.686 kb on + strand, within IAI46_01355at 296.686 kb on + strand, within IAI46_01355at 296.686 kb on + strand, within IAI46_01355at 296.744 kb on + strand, within IAI46_01355at 296.744 kb on + strand, within IAI46_01355at 296.744 kb on + strand, within IAI46_01355at 296.779 kb on + strand, within IAI46_01355at 296.780 kb on - strand, within IAI46_01355at 296.780 kb on - strand, within IAI46_01355at 297.025 kb on - strandat 297.026 kb on + strandat 297.063 kb on + strandat 297.155 kb on + strandat 297.156 kb on + strandat 297.247 kb on + strand, within IAI46_01360at 297.248 kb on - strand, within IAI46_01360at 297.266 kb on + strand, within IAI46_01360at 297.266 kb on + strand, within IAI46_01360at 297.267 kb on - strand, within IAI46_01360

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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295,055 + IAI46_01340 0.76 -0.2
295,055 + IAI46_01340 0.76 -0.5
295,056 - IAI46_01340 0.76 -0.6
295,061 + IAI46_01340 0.77 +0.6
295,102 + IAI46_01340 0.83 +0.4
295,102 + IAI46_01340 0.83 -0.0
295,256 - -0.0
295,267 + -0.5
295,268 - -0.1
295,268 - -1.1
295,268 - +0.5
295,268 - +0.1
295,268 - -1.4
295,273 + +0.0
295,277 + +0.8
295,331 + IAI46_01345 0.10 -0.6
295,332 - IAI46_01345 0.11 -0.5
295,332 - IAI46_01345 0.11 +1.0
295,332 - IAI46_01345 0.11 -0.9
295,352 + IAI46_01345 0.14 -2.7
295,352 + IAI46_01345 0.14 +0.2
295,353 - IAI46_01345 0.14 -0.8
295,356 + IAI46_01345 0.15 -0.9
295,357 - IAI46_01345 0.15 -0.8
295,410 + IAI46_01345 0.24 -0.4
295,559 + IAI46_01345 0.49 -1.4
295,559 + IAI46_01345 0.49 -1.7
295,559 + IAI46_01345 0.49 +0.3
295,559 + IAI46_01345 0.49 +0.0
295,559 + IAI46_01345 0.49 +0.6
295,560 - IAI46_01345 0.49 -0.2
295,567 + IAI46_01345 0.50 -1.4
295,832 + +0.1
295,832 + -0.0
295,833 - -1.0
295,857 + -0.7
295,857 + -0.6
295,858 - -0.9
295,878 - +0.7
295,878 - -0.5
295,899 + +0.5
295,899 + -0.7
295,969 + -0.1
295,969 + -0.2
295,969 + -0.3
295,970 - -1.2
296,025 + -1.3
296,026 - -0.5
296,036 + -0.5
296,036 + -0.3
296,036 + -0.3
296,037 - -0.6
296,037 - +0.5
296,037 - +0.1
296,037 - +0.5
296,042 + -0.7
296,047 + -0.5
296,048 - -0.5
296,048 - -0.4
296,048 - -0.5
296,073 + -0.8
296,073 + -1.3
296,110 + IAI46_01350 0.23 -0.9
296,140 + IAI46_01350 0.34 -1.9
296,143 + IAI46_01350 0.35 -0.4
296,144 - IAI46_01350 0.35 -0.2
296,144 - IAI46_01350 0.35 -1.1
296,144 - IAI46_01350 0.35 -0.3
296,172 + IAI46_01350 0.45 -0.4
296,246 - IAI46_01350 0.73 -1.2
296,270 - IAI46_01350 0.81 -0.9
296,271 - IAI46_01350 0.82 +0.0
296,318 + +0.5
296,321 + -0.4
296,322 - +0.9
296,322 - -0.2
296,344 - -0.5
296,486 - IAI46_01355 0.15 +0.7
296,543 + IAI46_01355 0.24 +0.5
296,544 - IAI46_01355 0.24 +0.6
296,583 - IAI46_01355 0.30 +0.3
296,614 + IAI46_01355 0.35 +1.3
296,647 + IAI46_01355 0.40 +0.4
296,648 - IAI46_01355 0.40 -0.5
296,679 + IAI46_01355 0.45 +1.4
296,680 - IAI46_01355 0.45 -0.3
296,680 - IAI46_01355 0.45 +0.8
296,686 + IAI46_01355 0.46 -0.1
296,686 + IAI46_01355 0.46 -1.7
296,686 + IAI46_01355 0.46 +0.2
296,686 + IAI46_01355 0.46 +0.3
296,744 + IAI46_01355 0.55 +0.1
296,744 + IAI46_01355 0.55 +0.6
296,744 + IAI46_01355 0.55 +0.4
296,779 + IAI46_01355 0.61 +0.3
296,780 - IAI46_01355 0.61 +0.7
296,780 - IAI46_01355 0.61 -0.1
297,025 - +0.8
297,026 + -1.0
297,063 + +0.4
297,155 + -3.0
297,156 + -1.9
297,247 + IAI46_01360 0.13 -0.2
297,248 - IAI46_01360 0.14 -2.6
297,266 + IAI46_01360 0.15 -1.2
297,266 + IAI46_01360 0.15 -0.7
297,267 - IAI46_01360 0.15 -1.2

Or see this region's nucleotide sequence