Strain Fitness in Serratia liquefaciens MT49 around IAI46_00790

Experiment: dichromate 20 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00785 and IAI46_00790 are separated by 11 nucleotidesIAI46_00790 and IAI46_00795 are separated by 35 nucleotides IAI46_00785: IAI46_00785 - lysophospholipase L2, at 178,417 to 179,454 _00785 IAI46_00790: IAI46_00790 - sugar/pyridoxal phosphate phosphatase YigL, at 179,466 to 180,266 _00790 IAI46_00795: IAI46_00795 - glycerophosphodiester phosphodiesterase, at 180,302 to 181,381 _00795 Position (kb) 179 180 181Strain fitness (log2 ratio) -2 -1 0 1 2at 178.562 kb on + strand, within IAI46_00785at 178.601 kb on + strand, within IAI46_00785at 178.602 kb on - strand, within IAI46_00785at 178.602 kb on - strand, within IAI46_00785at 178.629 kb on + strand, within IAI46_00785at 178.630 kb on - strand, within IAI46_00785at 178.634 kb on - strand, within IAI46_00785at 178.649 kb on - strand, within IAI46_00785at 178.685 kb on + strand, within IAI46_00785at 178.685 kb on + strand, within IAI46_00785at 178.686 kb on - strand, within IAI46_00785at 178.728 kb on + strand, within IAI46_00785at 178.748 kb on + strand, within IAI46_00785at 178.762 kb on + strand, within IAI46_00785at 178.930 kb on + strand, within IAI46_00785at 178.930 kb on + strand, within IAI46_00785at 178.931 kb on - strand, within IAI46_00785at 178.931 kb on - strand, within IAI46_00785at 178.931 kb on - strand, within IAI46_00785at 178.934 kb on + strand, within IAI46_00785at 178.939 kb on - strand, within IAI46_00785at 178.939 kb on - strand, within IAI46_00785at 179.002 kb on + strand, within IAI46_00785at 179.002 kb on + strand, within IAI46_00785at 179.002 kb on + strand, within IAI46_00785at 179.003 kb on - strand, within IAI46_00785at 179.005 kb on + strand, within IAI46_00785at 179.005 kb on + strand, within IAI46_00785at 179.006 kb on - strand, within IAI46_00785at 179.006 kb on - strand, within IAI46_00785at 179.006 kb on - strand, within IAI46_00785at 179.041 kb on + strand, within IAI46_00785at 179.098 kb on + strand, within IAI46_00785at 179.098 kb on + strand, within IAI46_00785at 179.138 kb on - strand, within IAI46_00785at 179.138 kb on - strand, within IAI46_00785at 179.176 kb on - strand, within IAI46_00785at 179.210 kb on + strand, within IAI46_00785at 179.414 kb on + strandat 179.414 kb on + strandat 179.415 kb on - strandat 179.415 kb on - strandat 179.415 kb on - strandat 179.415 kb on - strandat 179.415 kb on - strandat 179.422 kb on - strandat 179.453 kb on - strandat 179.460 kb on - strandat 179.460 kb on - strandat 179.460 kb on - strandat 179.465 kb on + strandat 179.465 kb on + strandat 179.465 kb on + strandat 179.465 kb on + strandat 179.465 kb on + strandat 179.465 kb on + strandat 179.466 kb on - strandat 179.466 kb on - strandat 179.466 kb on - strandat 179.466 kb on - strandat 179.469 kb on + strandat 179.469 kb on + strandat 179.491 kb on + strandat 179.491 kb on + strandat 179.491 kb on + strandat 179.491 kb on + strandat 179.491 kb on + strandat 179.492 kb on - strandat 179.740 kb on - strand, within IAI46_00790at 179.765 kb on + strand, within IAI46_00790at 179.799 kb on + strand, within IAI46_00790at 179.800 kb on - strand, within IAI46_00790at 179.907 kb on + strand, within IAI46_00790at 179.907 kb on + strand, within IAI46_00790at 179.908 kb on - strand, within IAI46_00790at 179.908 kb on - strand, within IAI46_00790at 179.908 kb on - strand, within IAI46_00790at 180.075 kb on + strand, within IAI46_00790at 180.077 kb on + strand, within IAI46_00790at 180.077 kb on + strand, within IAI46_00790at 180.077 kb on + strand, within IAI46_00790at 180.077 kb on + strand, within IAI46_00790at 180.078 kb on - strand, within IAI46_00790at 180.078 kb on - strand, within IAI46_00790at 180.078 kb on - strand, within IAI46_00790at 180.185 kb on + strand, within IAI46_00790at 180.186 kb on - strand, within IAI46_00790at 180.186 kb on - strand, within IAI46_00790at 180.241 kb on - strandat 180.241 kb on - strandat 180.241 kb on - strandat 180.241 kb on - strandat 180.241 kb on - strandat 180.267 kb on + strandat 180.268 kb on - strandat 180.268 kb on - strandat 180.300 kb on + strandat 180.300 kb on + strandat 180.301 kb on - strandat 180.301 kb on - strandat 180.303 kb on + strandat 180.303 kb on + strandat 180.304 kb on - strandat 180.387 kb on + strandat 180.399 kb on + strandat 180.399 kb on + strandat 180.399 kb on + strandat 180.423 kb on + strand, within IAI46_00795at 180.423 kb on + strand, within IAI46_00795at 180.552 kb on + strand, within IAI46_00795at 180.552 kb on + strand, within IAI46_00795at 180.552 kb on + strand, within IAI46_00795at 180.553 kb on - strand, within IAI46_00795at 180.553 kb on - strand, within IAI46_00795at 180.621 kb on + strand, within IAI46_00795at 180.622 kb on - strand, within IAI46_00795at 180.622 kb on - strand, within IAI46_00795at 180.627 kb on + strand, within IAI46_00795at 180.627 kb on + strand, within IAI46_00795at 180.628 kb on - strand, within IAI46_00795at 180.660 kb on + strand, within IAI46_00795at 180.682 kb on - strand, within IAI46_00795at 180.682 kb on - strand, within IAI46_00795at 180.682 kb on - strand, within IAI46_00795at 180.682 kb on - strand, within IAI46_00795at 180.682 kb on - strand, within IAI46_00795at 180.739 kb on + strand, within IAI46_00795at 180.739 kb on + strand, within IAI46_00795at 180.740 kb on - strand, within IAI46_00795at 180.777 kb on + strand, within IAI46_00795at 180.778 kb on - strand, within IAI46_00795at 180.778 kb on - strand, within IAI46_00795at 180.801 kb on + strand, within IAI46_00795at 180.801 kb on + strand, within IAI46_00795at 180.859 kb on + strand, within IAI46_00795at 180.860 kb on - strand, within IAI46_00795at 180.860 kb on - strand, within IAI46_00795at 180.860 kb on - strand, within IAI46_00795at 180.892 kb on + strand, within IAI46_00795at 180.892 kb on + strand, within IAI46_00795at 180.893 kb on - strand, within IAI46_00795at 180.893 kb on - strand, within IAI46_00795at 180.955 kb on + strand, within IAI46_00795at 180.955 kb on + strand, within IAI46_00795at 180.955 kb on + strand, within IAI46_00795at 180.955 kb on + strand, within IAI46_00795at 180.999 kb on + strand, within IAI46_00795at 181.007 kb on + strand, within IAI46_00795at 181.008 kb on - strand, within IAI46_00795at 181.008 kb on - strand, within IAI46_00795at 181.073 kb on - strand, within IAI46_00795at 181.073 kb on - strand, within IAI46_00795at 181.086 kb on + strand, within IAI46_00795at 181.086 kb on + strand, within IAI46_00795at 181.086 kb on + strand, within IAI46_00795at 181.086 kb on + strand, within IAI46_00795at 181.087 kb on - strand, within IAI46_00795at 181.090 kb on - strand, within IAI46_00795at 181.131 kb on - strand, within IAI46_00795at 181.131 kb on - strand, within IAI46_00795at 181.230 kb on + strand, within IAI46_00795at 181.230 kb on + strand, within IAI46_00795

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Per-strain Table

Position Strand Gene LocusTag Fraction dichromate 20 uM, aerobic
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178,562 + IAI46_00785 0.14 +0.6
178,601 + IAI46_00785 0.18 -0.4
178,602 - IAI46_00785 0.18 +0.2
178,602 - IAI46_00785 0.18 +0.5
178,629 + IAI46_00785 0.20 +2.2
178,630 - IAI46_00785 0.21 +1.3
178,634 - IAI46_00785 0.21 +1.1
178,649 - IAI46_00785 0.22 -0.3
178,685 + IAI46_00785 0.26 -1.2
178,685 + IAI46_00785 0.26 -0.0
178,686 - IAI46_00785 0.26 +0.0
178,728 + IAI46_00785 0.30 +0.3
178,748 + IAI46_00785 0.32 -0.6
178,762 + IAI46_00785 0.33 -0.1
178,930 + IAI46_00785 0.49 -0.0
178,930 + IAI46_00785 0.49 +0.8
178,931 - IAI46_00785 0.50 +0.2
178,931 - IAI46_00785 0.50 +0.7
178,931 - IAI46_00785 0.50 +0.1
178,934 + IAI46_00785 0.50 +0.4
178,939 - IAI46_00785 0.50 +0.2
178,939 - IAI46_00785 0.50 +0.5
179,002 + IAI46_00785 0.56 +0.0
179,002 + IAI46_00785 0.56 +1.3
179,002 + IAI46_00785 0.56 -0.1
179,003 - IAI46_00785 0.56 +0.4
179,005 + IAI46_00785 0.57 +0.3
179,005 + IAI46_00785 0.57 +0.1
179,006 - IAI46_00785 0.57 +2.1
179,006 - IAI46_00785 0.57 -0.5
179,006 - IAI46_00785 0.57 +0.4
179,041 + IAI46_00785 0.60 -0.7
179,098 + IAI46_00785 0.66 -1.2
179,098 + IAI46_00785 0.66 +0.9
179,138 - IAI46_00785 0.69 -0.0
179,138 - IAI46_00785 0.69 +1.2
179,176 - IAI46_00785 0.73 +0.2
179,210 + IAI46_00785 0.76 -0.0
179,414 + +0.1
179,414 + +1.4
179,415 - -0.4
179,415 - +0.1
179,415 - +0.5
179,415 - -0.0
179,415 - -0.5
179,422 - -2.2
179,453 - -1.0
179,460 - +0.3
179,460 - +0.2
179,460 - -0.5
179,465 + +0.1
179,465 + -0.3
179,465 + +1.1
179,465 + +0.4
179,465 + +0.3
179,465 + -0.6
179,466 - +0.4
179,466 - -0.3
179,466 - -0.2
179,466 - +0.2
179,469 + +0.2
179,469 + +0.6
179,491 + +0.6
179,491 + +0.1
179,491 + +0.3
179,491 + +0.2
179,491 + -0.8
179,492 - -0.1
179,740 - IAI46_00790 0.34 -0.1
179,765 + IAI46_00790 0.37 -0.9
179,799 + IAI46_00790 0.42 -0.0
179,800 - IAI46_00790 0.42 -0.4
179,907 + IAI46_00790 0.55 +0.7
179,907 + IAI46_00790 0.55 +0.2
179,908 - IAI46_00790 0.55 -0.1
179,908 - IAI46_00790 0.55 -1.7
179,908 - IAI46_00790 0.55 +0.6
180,075 + IAI46_00790 0.76 +0.4
180,077 + IAI46_00790 0.76 +0.4
180,077 + IAI46_00790 0.76 +0.3
180,077 + IAI46_00790 0.76 +1.0
180,077 + IAI46_00790 0.76 +0.0
180,078 - IAI46_00790 0.76 +0.4
180,078 - IAI46_00790 0.76 -0.2
180,078 - IAI46_00790 0.76 -1.1
180,185 + IAI46_00790 0.90 +0.7
180,186 - IAI46_00790 0.90 +0.2
180,186 - IAI46_00790 0.90 -0.4
180,241 - +0.7
180,241 - -0.3
180,241 - +0.0
180,241 - +0.9
180,241 - +0.5
180,267 + +0.8
180,268 - +0.1
180,268 - +0.1
180,300 + +0.5
180,300 + -0.2
180,301 - +0.1
180,301 - +0.8
180,303 + -0.0
180,303 + -0.3
180,304 - +0.3
180,387 + -0.1
180,399 + +0.8
180,399 + +1.7
180,399 + +0.5
180,423 + IAI46_00795 0.11 +0.2
180,423 + IAI46_00795 0.11 +1.0
180,552 + IAI46_00795 0.23 +0.0
180,552 + IAI46_00795 0.23 +1.3
180,552 + IAI46_00795 0.23 +0.1
180,553 - IAI46_00795 0.23 -0.1
180,553 - IAI46_00795 0.23 +0.7
180,621 + IAI46_00795 0.30 +0.4
180,622 - IAI46_00795 0.30 +0.8
180,622 - IAI46_00795 0.30 +0.5
180,627 + IAI46_00795 0.30 -0.2
180,627 + IAI46_00795 0.30 -0.1
180,628 - IAI46_00795 0.30 +0.0
180,660 + IAI46_00795 0.33 -0.7
180,682 - IAI46_00795 0.35 +1.0
180,682 - IAI46_00795 0.35 +0.2
180,682 - IAI46_00795 0.35 +1.3
180,682 - IAI46_00795 0.35 -0.2
180,682 - IAI46_00795 0.35 -1.4
180,739 + IAI46_00795 0.40 +1.2
180,739 + IAI46_00795 0.40 -0.3
180,740 - IAI46_00795 0.41 +0.0
180,777 + IAI46_00795 0.44 +1.3
180,778 - IAI46_00795 0.44 +0.7
180,778 - IAI46_00795 0.44 +0.5
180,801 + IAI46_00795 0.46 -0.3
180,801 + IAI46_00795 0.46 -0.5
180,859 + IAI46_00795 0.52 -0.2
180,860 - IAI46_00795 0.52 +0.6
180,860 - IAI46_00795 0.52 +0.9
180,860 - IAI46_00795 0.52 -1.2
180,892 + IAI46_00795 0.55 -0.4
180,892 + IAI46_00795 0.55 -0.7
180,893 - IAI46_00795 0.55 -0.3
180,893 - IAI46_00795 0.55 -0.0
180,955 + IAI46_00795 0.60 +0.3
180,955 + IAI46_00795 0.60 +0.9
180,955 + IAI46_00795 0.60 +0.2
180,955 + IAI46_00795 0.60 +0.4
180,999 + IAI46_00795 0.65 -0.0
181,007 + IAI46_00795 0.65 +0.2
181,008 - IAI46_00795 0.65 -0.4
181,008 - IAI46_00795 0.65 -0.1
181,073 - IAI46_00795 0.71 +2.0
181,073 - IAI46_00795 0.71 +0.7
181,086 + IAI46_00795 0.73 -0.1
181,086 + IAI46_00795 0.73 +1.4
181,086 + IAI46_00795 0.73 +0.5
181,086 + IAI46_00795 0.73 -0.6
181,087 - IAI46_00795 0.73 -0.3
181,090 - IAI46_00795 0.73 -0.0
181,131 - IAI46_00795 0.77 +0.2
181,131 - IAI46_00795 0.77 +0.0
181,230 + IAI46_00795 0.86 +1.0
181,230 + IAI46_00795 0.86 +0.0

Or see this region's nucleotide sequence