Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_4433 and EX28DRAFT_4434 are separated by 56 nucleotides EX28DRAFT_4434 and EX28DRAFT_4435 are separated by 53 nucleotides EX28DRAFT_4435 and EX28DRAFT_4436 are separated by 100 nucleotides EX28DRAFT_4436 and EX28DRAFT_4437 are separated by 118 nucleotides EX28DRAFT_4437 and EX28DRAFT_4438 are separated by 29 nucleotides
EX28DRAFT_4433: EX28DRAFT_4433 - 5S, at 25 to 140
_4433
EX28DRAFT_4434: EX28DRAFT_4434 - tRNA, at 197 to 273
_4434
EX28DRAFT_4435: EX28DRAFT_4435 - tRNA, at 327 to 402
_4435
EX28DRAFT_4436: EX28DRAFT_4436 - Transcriptional regulator, at 503 to 1,324
_4436
EX28DRAFT_4437: EX28DRAFT_4437 - Uncharacterized protein conserved in bacteria, at 1,443 to 1,781
_4437
EX28DRAFT_4438: EX28DRAFT_4438 - Mg chelatase-related protein, at 1,811 to 3,331
_4438
Position (kb) 0
1
2 Strain fitness (log2 ratio) -2
-1
0
1 at 0.287 kb on + strand at 0.405 kb on + strand at 0.405 kb on + strand at 0.405 kb on + strand at 0.469 kb on + strand at 0.469 kb on + strand at 0.577 kb on - strand at 0.786 kb on - strand, within EX28DRAFT_4436 at 0.790 kb on - strand, within EX28DRAFT_4436 at 0.829 kb on - strand, within EX28DRAFT_4436 at 1.060 kb on + strand, within EX28DRAFT_4436 at 1.061 kb on - strand, within EX28DRAFT_4436 at 1.072 kb on + strand, within EX28DRAFT_4436 at 1.087 kb on + strand, within EX28DRAFT_4436 at 1.249 kb on - strand at 1.389 kb on + strand at 1.389 kb on + strand at 1.393 kb on + strand at 1.394 kb on - strand at 1.413 kb on - strand at 1.672 kb on + strand, within EX28DRAFT_4437 at 1.683 kb on + strand, within EX28DRAFT_4437 at 1.683 kb on + strand, within EX28DRAFT_4437 at 1.684 kb on - strand, within EX28DRAFT_4437 at 1.684 kb on - strand, within EX28DRAFT_4437 at 1.761 kb on + strand at 1.813 kb on - strand at 1.958 kb on + strand at 1.958 kb on + strand at 1.959 kb on - strand at 2.061 kb on - strand, within EX28DRAFT_4438 at 2.080 kb on - strand, within EX28DRAFT_4438 at 2.114 kb on + strand, within EX28DRAFT_4438 at 2.114 kb on + strand, within EX28DRAFT_4438 at 2.225 kb on - strand, within EX28DRAFT_4438 at 2.263 kb on + strand, within EX28DRAFT_4438
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 287 + -2.2 405 + +1.6 405 + +0.3 405 + -1.5 469 + -1.4 469 + +0.1 577 - -0.2 786 - EX28DRAFT_4436 0.34 -0.5 790 - EX28DRAFT_4436 0.35 -1.2 829 - EX28DRAFT_4436 0.40 -0.4 1,060 + EX28DRAFT_4436 0.68 +0.0 1,061 - EX28DRAFT_4436 0.68 -1.1 1,072 + EX28DRAFT_4436 0.69 -1.1 1,087 + EX28DRAFT_4436 0.71 -0.7 1,249 - -0.5 1,389 + -0.3 1,389 + -1.4 1,393 + +0.3 1,394 - -1.8 1,413 - -0.6 1,672 + EX28DRAFT_4437 0.68 -0.9 1,683 + EX28DRAFT_4437 0.71 +0.1 1,683 + EX28DRAFT_4437 0.71 +0.2 1,684 - EX28DRAFT_4437 0.71 -0.3 1,684 - EX28DRAFT_4437 0.71 -0.0 1,761 + -0.1 1,813 - +0.8 1,958 + -0.0 1,958 + +0.2 1,959 - +0.2 2,061 - EX28DRAFT_4438 0.16 +0.2 2,080 - EX28DRAFT_4438 0.18 +0.0 2,114 + EX28DRAFT_4438 0.20 +0.8 2,114 + EX28DRAFT_4438 0.20 -0.3 2,225 - EX28DRAFT_4438 0.27 -0.1 2,263 + EX28DRAFT_4438 0.30 -0.3
Or see this region's nucleotide sequence