Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_4031

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_4030 and EX28DRAFT_4031 overlap by 4 nucleotidesEX28DRAFT_4031 and EX28DRAFT_4032 are separated by 472 nucleotides EX28DRAFT_4030: EX28DRAFT_4030 - drug resistance transporter, EmrB/QacA subfamily, at 241,870 to 243,303 _4030 EX28DRAFT_4031: EX28DRAFT_4031 - Transcriptional regulators, at 243,300 to 244,007 _4031 EX28DRAFT_4032: EX28DRAFT_4032 - 16S, at 244,480 to 244,607 _4032 Position (kb) 243 244 245Strain fitness (log2 ratio) -2 -1 0 1 2at 242.356 kb on - strand, within EX28DRAFT_4030at 242.575 kb on + strand, within EX28DRAFT_4030at 242.576 kb on - strand, within EX28DRAFT_4030at 242.576 kb on - strand, within EX28DRAFT_4030at 242.576 kb on - strand, within EX28DRAFT_4030at 242.577 kb on + strand, within EX28DRAFT_4030at 242.578 kb on - strand, within EX28DRAFT_4030at 242.579 kb on + strand, within EX28DRAFT_4030at 242.579 kb on + strand, within EX28DRAFT_4030at 242.580 kb on - strand, within EX28DRAFT_4030at 242.591 kb on - strand, within EX28DRAFT_4030at 242.748 kb on + strand, within EX28DRAFT_4030at 242.749 kb on - strand, within EX28DRAFT_4030at 242.750 kb on + strand, within EX28DRAFT_4030at 242.750 kb on + strand, within EX28DRAFT_4030at 242.750 kb on + strand, within EX28DRAFT_4030at 242.751 kb on - strand, within EX28DRAFT_4030at 242.751 kb on - strand, within EX28DRAFT_4030at 242.751 kb on - strand, within EX28DRAFT_4030at 242.762 kb on + strand, within EX28DRAFT_4030at 242.763 kb on - strand, within EX28DRAFT_4030at 242.794 kb on - strand, within EX28DRAFT_4030at 242.794 kb on - strand, within EX28DRAFT_4030at 242.794 kb on - strand, within EX28DRAFT_4030at 242.994 kb on + strand, within EX28DRAFT_4030at 243.119 kb on - strand, within EX28DRAFT_4030at 243.141 kb on - strand, within EX28DRAFT_4030at 243.195 kb on + strandat 243.437 kb on + strand, within EX28DRAFT_4031at 243.438 kb on - strand, within EX28DRAFT_4031at 243.438 kb on - strand, within EX28DRAFT_4031at 243.443 kb on + strand, within EX28DRAFT_4031at 243.443 kb on + strand, within EX28DRAFT_4031at 243.444 kb on - strand, within EX28DRAFT_4031at 243.448 kb on + strand, within EX28DRAFT_4031at 243.448 kb on + strand, within EX28DRAFT_4031at 243.448 kb on + strand, within EX28DRAFT_4031at 243.449 kb on - strand, within EX28DRAFT_4031at 243.458 kb on - strand, within EX28DRAFT_4031at 243.512 kb on + strand, within EX28DRAFT_4031at 243.514 kb on + strand, within EX28DRAFT_4031at 243.514 kb on + strand, within EX28DRAFT_4031at 243.514 kb on + strand, within EX28DRAFT_4031at 243.514 kb on + strand, within EX28DRAFT_4031at 243.514 kb on + strand, within EX28DRAFT_4031at 243.514 kb on + strand, within EX28DRAFT_4031at 243.514 kb on + strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.515 kb on - strand, within EX28DRAFT_4031at 243.765 kb on - strand, within EX28DRAFT_4031at 243.812 kb on + strand, within EX28DRAFT_4031at 243.813 kb on - strand, within EX28DRAFT_4031at 243.916 kb on + strand, within EX28DRAFT_4031at 243.917 kb on - strand, within EX28DRAFT_4031at 243.917 kb on - strand, within EX28DRAFT_4031at 243.917 kb on - strand, within EX28DRAFT_4031at 243.920 kb on + strand, within EX28DRAFT_4031at 243.961 kb on + strandat 243.961 kb on + strandat 243.961 kb on + strandat 244.042 kb on - strandat 244.073 kb on + strandat 244.074 kb on - strandat 244.074 kb on - strandat 244.082 kb on + strandat 244.172 kb on - strandat 244.180 kb on - strandat 244.182 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
remove
242,356 - EX28DRAFT_4030 0.34 +0.3
242,575 + EX28DRAFT_4030 0.49 +0.1
242,576 - EX28DRAFT_4030 0.49 +0.2
242,576 - EX28DRAFT_4030 0.49 +1.0
242,576 - EX28DRAFT_4030 0.49 +0.4
242,577 + EX28DRAFT_4030 0.49 -0.3
242,578 - EX28DRAFT_4030 0.49 +1.4
242,579 + EX28DRAFT_4030 0.49 +0.1
242,579 + EX28DRAFT_4030 0.49 +0.2
242,580 - EX28DRAFT_4030 0.50 +0.9
242,591 - EX28DRAFT_4030 0.50 -0.2
242,748 + EX28DRAFT_4030 0.61 +0.8
242,749 - EX28DRAFT_4030 0.61 -0.4
242,750 + EX28DRAFT_4030 0.61 +0.4
242,750 + EX28DRAFT_4030 0.61 -0.3
242,750 + EX28DRAFT_4030 0.61 -0.2
242,751 - EX28DRAFT_4030 0.61 -0.5
242,751 - EX28DRAFT_4030 0.61 -0.5
242,751 - EX28DRAFT_4030 0.61 -0.3
242,762 + EX28DRAFT_4030 0.62 -0.8
242,763 - EX28DRAFT_4030 0.62 +0.4
242,794 - EX28DRAFT_4030 0.64 +0.5
242,794 - EX28DRAFT_4030 0.64 +1.8
242,794 - EX28DRAFT_4030 0.64 +0.5
242,994 + EX28DRAFT_4030 0.78 -0.2
243,119 - EX28DRAFT_4030 0.87 -0.0
243,141 - EX28DRAFT_4030 0.89 -0.3
243,195 + +0.3
243,437 + EX28DRAFT_4031 0.19 +0.1
243,438 - EX28DRAFT_4031 0.19 -0.5
243,438 - EX28DRAFT_4031 0.19 -1.8
243,443 + EX28DRAFT_4031 0.20 +1.8
243,443 + EX28DRAFT_4031 0.20 -0.4
243,444 - EX28DRAFT_4031 0.20 -0.1
243,448 + EX28DRAFT_4031 0.21 +0.2
243,448 + EX28DRAFT_4031 0.21 -0.5
243,448 + EX28DRAFT_4031 0.21 +0.3
243,449 - EX28DRAFT_4031 0.21 -1.1
243,458 - EX28DRAFT_4031 0.22 -0.6
243,512 + EX28DRAFT_4031 0.30 +0.8
243,514 + EX28DRAFT_4031 0.30 -0.1
243,514 + EX28DRAFT_4031 0.30 -0.1
243,514 + EX28DRAFT_4031 0.30 -0.4
243,514 + EX28DRAFT_4031 0.30 +0.5
243,514 + EX28DRAFT_4031 0.30 +0.2
243,514 + EX28DRAFT_4031 0.30 +2.4
243,514 + EX28DRAFT_4031 0.30 -0.7
243,515 - EX28DRAFT_4031 0.30 -0.4
243,515 - EX28DRAFT_4031 0.30 +0.1
243,515 - EX28DRAFT_4031 0.30 -0.8
243,515 - EX28DRAFT_4031 0.30 -1.0
243,515 - EX28DRAFT_4031 0.30 -0.2
243,515 - EX28DRAFT_4031 0.30 -0.0
243,515 - EX28DRAFT_4031 0.30 -0.1
243,515 - EX28DRAFT_4031 0.30 +0.2
243,515 - EX28DRAFT_4031 0.30 -1.1
243,515 - EX28DRAFT_4031 0.30 -1.0
243,515 - EX28DRAFT_4031 0.30 -0.6
243,765 - EX28DRAFT_4031 0.66 +0.1
243,812 + EX28DRAFT_4031 0.72 +0.2
243,813 - EX28DRAFT_4031 0.72 -0.7
243,916 + EX28DRAFT_4031 0.87 +0.9
243,917 - EX28DRAFT_4031 0.87 -0.4
243,917 - EX28DRAFT_4031 0.87 +0.2
243,917 - EX28DRAFT_4031 0.87 +0.2
243,920 + EX28DRAFT_4031 0.88 -0.9
243,961 + +0.5
243,961 + +0.8
243,961 + -1.0
244,042 - -0.1
244,073 + -0.8
244,074 - +0.1
244,074 - -0.8
244,082 + +0.5
244,172 - -0.1
244,180 - -0.2
244,182 - -0.4

Or see this region's nucleotide sequence