Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3885

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3883 and EX28DRAFT_3884 are separated by 3 nucleotidesEX28DRAFT_3884 and EX28DRAFT_3885 are separated by 2 nucleotidesEX28DRAFT_3885 and EX28DRAFT_3886 are separated by 72 nucleotidesEX28DRAFT_3886 and EX28DRAFT_3887 are separated by 22 nucleotidesEX28DRAFT_3887 and EX28DRAFT_3888 are separated by 218 nucleotides EX28DRAFT_3883: EX28DRAFT_3883 - Glycosyltransferases involved in cell wall biogenesis, at 93,953 to 94,723 _3883 EX28DRAFT_3884: EX28DRAFT_3884 - Phosphopantetheine adenylyltransferase (EC 2.7.7.3), at 94,727 to 95,206 _3884 EX28DRAFT_3885: EX28DRAFT_3885 - DNA-(apurinic or apyrimidinic site) lyase (EC 4.2.99.18), at 95,209 to 96,018 _3885 EX28DRAFT_3886: EX28DRAFT_3886 - ribosomal protein L33, bacterial type, at 96,091 to 96,258 _3886 EX28DRAFT_3887: EX28DRAFT_3887 - LSU ribosomal protein L28P, at 96,281 to 96,517 _3887 EX28DRAFT_3888: EX28DRAFT_3888 - DNA repair protein radc, at 96,736 to 97,404 _3888 Position (kb) 95 96 97Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 94.355 kb on + strand, within EX28DRAFT_3883at 94.376 kb on + strand, within EX28DRAFT_3883at 94.664 kb on - strandat 95.199 kb on + strandat 95.199 kb on + strandat 95.200 kb on - strandat 95.205 kb on - strandat 95.205 kb on - strandat 95.210 kb on + strandat 95.309 kb on + strand, within EX28DRAFT_3885at 95.311 kb on + strand, within EX28DRAFT_3885at 95.311 kb on + strand, within EX28DRAFT_3885at 95.311 kb on + strand, within EX28DRAFT_3885at 95.311 kb on + strand, within EX28DRAFT_3885at 95.311 kb on + strand, within EX28DRAFT_3885at 95.312 kb on - strand, within EX28DRAFT_3885at 95.312 kb on - strand, within EX28DRAFT_3885at 95.312 kb on - strand, within EX28DRAFT_3885at 95.312 kb on - strand, within EX28DRAFT_3885at 95.312 kb on - strand, within EX28DRAFT_3885at 95.312 kb on - strand, within EX28DRAFT_3885at 95.312 kb on - strand, within EX28DRAFT_3885at 95.334 kb on - strand, within EX28DRAFT_3885at 95.397 kb on + strand, within EX28DRAFT_3885at 95.398 kb on - strand, within EX28DRAFT_3885at 95.398 kb on - strand, within EX28DRAFT_3885at 95.401 kb on + strand, within EX28DRAFT_3885at 95.401 kb on + strand, within EX28DRAFT_3885at 95.404 kb on + strand, within EX28DRAFT_3885at 95.413 kb on - strand, within EX28DRAFT_3885at 95.507 kb on + strand, within EX28DRAFT_3885at 95.508 kb on - strand, within EX28DRAFT_3885at 95.512 kb on - strand, within EX28DRAFT_3885at 95.538 kb on + strand, within EX28DRAFT_3885at 95.595 kb on - strand, within EX28DRAFT_3885at 95.595 kb on - strand, within EX28DRAFT_3885at 95.815 kb on - strand, within EX28DRAFT_3885at 95.815 kb on - strand, within EX28DRAFT_3885at 95.863 kb on + strand, within EX28DRAFT_3885at 95.998 kb on + strandat 95.999 kb on - strandat 96.008 kb on - strandat 96.008 kb on - strandat 96.008 kb on - strandat 96.784 kb on + strandat 96.784 kb on + strandat 96.892 kb on - strand, within EX28DRAFT_3888at 96.892 kb on - strand, within EX28DRAFT_3888

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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94,355 + EX28DRAFT_3883 0.52 -1.5
94,376 + EX28DRAFT_3883 0.55 -0.8
94,664 - -1.5
95,199 + -0.0
95,199 + +0.4
95,200 - -0.0
95,205 - -0.3
95,205 - +0.1
95,210 + -0.2
95,309 + EX28DRAFT_3885 0.12 +0.8
95,311 + EX28DRAFT_3885 0.13 -2.8
95,311 + EX28DRAFT_3885 0.13 +0.2
95,311 + EX28DRAFT_3885 0.13 -0.2
95,311 + EX28DRAFT_3885 0.13 -0.6
95,311 + EX28DRAFT_3885 0.13 -0.5
95,312 - EX28DRAFT_3885 0.13 +1.8
95,312 - EX28DRAFT_3885 0.13 -0.4
95,312 - EX28DRAFT_3885 0.13 +0.2
95,312 - EX28DRAFT_3885 0.13 -1.2
95,312 - EX28DRAFT_3885 0.13 -0.4
95,312 - EX28DRAFT_3885 0.13 -0.3
95,312 - EX28DRAFT_3885 0.13 +0.0
95,334 - EX28DRAFT_3885 0.15 -0.0
95,397 + EX28DRAFT_3885 0.23 +0.3
95,398 - EX28DRAFT_3885 0.23 -0.7
95,398 - EX28DRAFT_3885 0.23 -1.4
95,401 + EX28DRAFT_3885 0.24 +0.4
95,401 + EX28DRAFT_3885 0.24 -1.2
95,404 + EX28DRAFT_3885 0.24 -0.4
95,413 - EX28DRAFT_3885 0.25 -0.5
95,507 + EX28DRAFT_3885 0.37 -0.5
95,508 - EX28DRAFT_3885 0.37 -0.3
95,512 - EX28DRAFT_3885 0.37 +0.0
95,538 + EX28DRAFT_3885 0.41 +0.1
95,595 - EX28DRAFT_3885 0.48 -1.5
95,595 - EX28DRAFT_3885 0.48 -1.2
95,815 - EX28DRAFT_3885 0.75 +0.4
95,815 - EX28DRAFT_3885 0.75 -0.8
95,863 + EX28DRAFT_3885 0.81 -0.3
95,998 + +0.5
95,999 - -0.3
96,008 - -0.7
96,008 - -1.1
96,008 - +0.5
96,784 + -0.3
96,784 + -0.9
96,892 - EX28DRAFT_3888 0.23 +0.3
96,892 - EX28DRAFT_3888 0.23 +0.3

Or see this region's nucleotide sequence