Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3872

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3871 and EX28DRAFT_3872 are separated by 2 nucleotidesEX28DRAFT_3872 and EX28DRAFT_3873 are separated by 3 nucleotidesEX28DRAFT_3873 and EX28DRAFT_3874 are separated by 3 nucleotides EX28DRAFT_3871: EX28DRAFT_3871 - ADP-L-glycero-D-manno-heptose-6-epimerase, at 80,985 to 81,917 _3871 EX28DRAFT_3872: EX28DRAFT_3872 - lipopolysaccharide heptosyltransferase II, at 81,920 to 82,966 _3872 EX28DRAFT_3873: EX28DRAFT_3873 - lipopolysaccharide heptosyltransferase I, at 82,970 to 83,953 _3873 EX28DRAFT_3874: EX28DRAFT_3874 - ADP-heptose:LPS heptosyltransferase, at 83,957 to 85,066 _3874 Position (kb) 81 82 83Strain fitness (log2 ratio) -1 0 1at 80.924 kb on + strandat 80.925 kb on - strandat 81.915 kb on + strandat 81.919 kb on + strandat 83.948 kb on - strandat 83.948 kb on - strandat 83.951 kb on + strandat 83.951 kb on + strandat 83.951 kb on + strandat 83.952 kb on - strandat 83.964 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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80,924 + +0.2
80,925 - +0.6
81,915 + -0.3
81,919 + -0.4
83,948 - -0.8
83,948 - -0.0
83,951 + -0.0
83,951 + +1.5
83,951 + -0.3
83,952 - +0.8
83,964 - +0.2

Or see this region's nucleotide sequence