Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3716

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3715 and EX28DRAFT_3716 are separated by 190 nucleotidesEX28DRAFT_3716 and EX28DRAFT_3717 are separated by 31 nucleotidesEX28DRAFT_3717 and EX28DRAFT_3718 are separated by 0 nucleotides EX28DRAFT_3715: EX28DRAFT_3715 - aconitase (EC 4.2.1.3), at 389,084 to 391,832 _3715 EX28DRAFT_3716: EX28DRAFT_3716 - Uncharacterized protein conserved in bacteria, at 392,023 to 392,385 _3716 EX28DRAFT_3717: EX28DRAFT_3717 - S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form, at 392,417 to 393,211 _3717 EX28DRAFT_3718: EX28DRAFT_3718 - spermidine synthase, at 393,212 to 394,081 _3718 Position (kb) 392 393Strain fitness (log2 ratio) -2 -1 0 1 2at 391.829 kb on - strandat 391.830 kb on + strandat 391.993 kb on + strandat 391.993 kb on + strandat 392.029 kb on + strandat 392.030 kb on - strandat 392.163 kb on + strand, within EX28DRAFT_3716at 392.210 kb on - strand, within EX28DRAFT_3716at 392.211 kb on + strand, within EX28DRAFT_3716at 392.211 kb on + strand, within EX28DRAFT_3716at 392.212 kb on - strand, within EX28DRAFT_3716at 392.212 kb on - strand, within EX28DRAFT_3716at 392.212 kb on - strand, within EX28DRAFT_3716at 392.212 kb on - strand, within EX28DRAFT_3716at 392.300 kb on - strand, within EX28DRAFT_3716at 392.351 kb on + strandat 392.480 kb on - strandat 392.530 kb on + strand, within EX28DRAFT_3717at 392.530 kb on + strand, within EX28DRAFT_3717at 392.530 kb on + strand, within EX28DRAFT_3717at 392.531 kb on - strand, within EX28DRAFT_3717at 392.531 kb on - strand, within EX28DRAFT_3717at 392.532 kb on + strand, within EX28DRAFT_3717at 392.533 kb on - strand, within EX28DRAFT_3717at 392.540 kb on - strand, within EX28DRAFT_3717at 392.554 kb on + strand, within EX28DRAFT_3717at 392.559 kb on - strand, within EX28DRAFT_3717at 392.578 kb on + strand, within EX28DRAFT_3717at 392.590 kb on - strand, within EX28DRAFT_3717at 392.614 kb on - strand, within EX28DRAFT_3717at 392.639 kb on - strand, within EX28DRAFT_3717at 392.639 kb on - strand, within EX28DRAFT_3717at 392.639 kb on - strand, within EX28DRAFT_3717at 392.657 kb on - strand, within EX28DRAFT_3717at 392.760 kb on + strand, within EX28DRAFT_3717at 392.760 kb on + strand, within EX28DRAFT_3717at 392.761 kb on - strand, within EX28DRAFT_3717at 392.761 kb on - strand, within EX28DRAFT_3717at 392.824 kb on + strand, within EX28DRAFT_3717at 392.872 kb on + strand, within EX28DRAFT_3717at 392.872 kb on + strand, within EX28DRAFT_3717at 392.873 kb on - strand, within EX28DRAFT_3717at 392.882 kb on - strand, within EX28DRAFT_3717at 392.938 kb on + strand, within EX28DRAFT_3717at 393.000 kb on + strand, within EX28DRAFT_3717at 393.000 kb on + strand, within EX28DRAFT_3717at 393.000 kb on + strand, within EX28DRAFT_3717at 393.037 kb on + strand, within EX28DRAFT_3717at 393.084 kb on + strand, within EX28DRAFT_3717at 393.084 kb on + strand, within EX28DRAFT_3717at 393.098 kb on - strand, within EX28DRAFT_3717at 393.099 kb on + strand, within EX28DRAFT_3717at 393.099 kb on + strand, within EX28DRAFT_3717at 393.100 kb on - strand, within EX28DRAFT_3717at 393.138 kb on + strandat 393.139 kb on - strandat 393.139 kb on - strandat 393.150 kb on + strandat 393.151 kb on - strandat 393.151 kb on - strandat 393.151 kb on - strandat 393.151 kb on - strandat 393.151 kb on - strandat 393.199 kb on + strandat 393.226 kb on + strandat 393.249 kb on + strandat 393.274 kb on + strandat 393.292 kb on - strandat 393.347 kb on + strand, within EX28DRAFT_3718at 393.347 kb on + strand, within EX28DRAFT_3718at 393.348 kb on - strand, within EX28DRAFT_3718

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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391,829 - -0.9
391,830 + +0.5
391,993 + -1.8
391,993 + -0.8
392,029 + +0.2
392,030 - +0.5
392,163 + EX28DRAFT_3716 0.39 +1.8
392,210 - EX28DRAFT_3716 0.52 +1.1
392,211 + EX28DRAFT_3716 0.52 +0.0
392,211 + EX28DRAFT_3716 0.52 +0.2
392,212 - EX28DRAFT_3716 0.52 -0.3
392,212 - EX28DRAFT_3716 0.52 -0.5
392,212 - EX28DRAFT_3716 0.52 +0.8
392,212 - EX28DRAFT_3716 0.52 +0.1
392,300 - EX28DRAFT_3716 0.76 +1.2
392,351 + -0.5
392,480 - -0.0
392,530 + EX28DRAFT_3717 0.14 -0.3
392,530 + EX28DRAFT_3717 0.14 -1.1
392,530 + EX28DRAFT_3717 0.14 -0.2
392,531 - EX28DRAFT_3717 0.14 +0.1
392,531 - EX28DRAFT_3717 0.14 +0.0
392,532 + EX28DRAFT_3717 0.14 +0.1
392,533 - EX28DRAFT_3717 0.15 -2.7
392,540 - EX28DRAFT_3717 0.15 +0.0
392,554 + EX28DRAFT_3717 0.17 -0.2
392,559 - EX28DRAFT_3717 0.18 -1.8
392,578 + EX28DRAFT_3717 0.20 +0.3
392,590 - EX28DRAFT_3717 0.22 +0.4
392,614 - EX28DRAFT_3717 0.25 +0.5
392,639 - EX28DRAFT_3717 0.28 +0.5
392,639 - EX28DRAFT_3717 0.28 -0.3
392,639 - EX28DRAFT_3717 0.28 +1.5
392,657 - EX28DRAFT_3717 0.30 +0.1
392,760 + EX28DRAFT_3717 0.43 +0.3
392,760 + EX28DRAFT_3717 0.43 +0.1
392,761 - EX28DRAFT_3717 0.43 -0.1
392,761 - EX28DRAFT_3717 0.43 -0.5
392,824 + EX28DRAFT_3717 0.51 +0.6
392,872 + EX28DRAFT_3717 0.57 -0.0
392,872 + EX28DRAFT_3717 0.57 +0.7
392,873 - EX28DRAFT_3717 0.57 +0.1
392,882 - EX28DRAFT_3717 0.58 -0.8
392,938 + EX28DRAFT_3717 0.66 +0.2
393,000 + EX28DRAFT_3717 0.73 -0.5
393,000 + EX28DRAFT_3717 0.73 -0.2
393,000 + EX28DRAFT_3717 0.73 -0.1
393,037 + EX28DRAFT_3717 0.78 -0.8
393,084 + EX28DRAFT_3717 0.84 +0.1
393,084 + EX28DRAFT_3717 0.84 -0.0
393,098 - EX28DRAFT_3717 0.86 +0.4
393,099 + EX28DRAFT_3717 0.86 +0.1
393,099 + EX28DRAFT_3717 0.86 -0.7
393,100 - EX28DRAFT_3717 0.86 +0.5
393,138 + +0.0
393,139 - -0.1
393,139 - -0.5
393,150 + -0.6
393,151 - -0.1
393,151 - +0.2
393,151 - -0.9
393,151 - +1.5
393,151 - +1.1
393,199 + +0.5
393,226 + -0.1
393,249 + +2.3
393,274 + -1.0
393,292 - -0.1
393,347 + EX28DRAFT_3718 0.16 +0.3
393,347 + EX28DRAFT_3718 0.16 +0.1
393,348 - EX28DRAFT_3718 0.16 -0.4

Or see this region's nucleotide sequence