Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3622

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3620 and EX28DRAFT_3621 are separated by 110 nucleotidesEX28DRAFT_3621 and EX28DRAFT_3622 are separated by 122 nucleotidesEX28DRAFT_3622 and EX28DRAFT_3623 overlap by 24 nucleotidesEX28DRAFT_3623 and EX28DRAFT_3624 are separated by 26 nucleotidesEX28DRAFT_3624 and EX28DRAFT_3625 are separated by 117 nucleotides EX28DRAFT_3620: EX28DRAFT_3620 - transaldolase, at 280,176 to 281,129 _3620 EX28DRAFT_3621: EX28DRAFT_3621 - molybdenum cofactor synthesis domain, at 281,240 to 281,827 _3621 EX28DRAFT_3622: EX28DRAFT_3622 - Arabinose efflux permease, at 281,950 to 283,272 _3622 EX28DRAFT_3623: EX28DRAFT_3623 - Predicted membrane protein, at 283,249 to 283,815 _3623 EX28DRAFT_3624: EX28DRAFT_3624 - hypothetical protein, at 283,842 to 283,994 _3624 EX28DRAFT_3625: EX28DRAFT_3625 - chaperone protein DnaK, at 284,112 to 286,025 _3625 Position (kb) 281 282 283 284Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 280.959 kb on - strand, within EX28DRAFT_3620at 280.969 kb on - strand, within EX28DRAFT_3620at 281.050 kb on + strandat 281.128 kb on - strandat 281.165 kb on + strandat 281.200 kb on + strandat 281.240 kb on - strandat 281.245 kb on + strandat 281.245 kb on + strandat 281.245 kb on + strandat 281.250 kb on + strandat 281.250 kb on + strandat 281.262 kb on + strandat 281.262 kb on + strandat 281.556 kb on + strand, within EX28DRAFT_3621at 281.556 kb on + strand, within EX28DRAFT_3621at 281.556 kb on + strand, within EX28DRAFT_3621at 281.563 kb on - strand, within EX28DRAFT_3621at 281.724 kb on + strand, within EX28DRAFT_3621at 281.735 kb on - strand, within EX28DRAFT_3621at 281.756 kb on + strand, within EX28DRAFT_3621at 281.756 kb on + strand, within EX28DRAFT_3621at 281.757 kb on - strand, within EX28DRAFT_3621at 281.818 kb on - strandat 281.838 kb on + strandat 281.838 kb on + strandat 281.838 kb on + strandat 281.839 kb on - strandat 281.849 kb on - strandat 281.881 kb on - strandat 281.950 kb on - strandat 281.958 kb on + strandat 281.958 kb on + strandat 281.959 kb on - strandat 281.959 kb on - strandat 281.986 kb on + strandat 282.069 kb on - strandat 282.205 kb on - strand, within EX28DRAFT_3622at 282.274 kb on + strand, within EX28DRAFT_3622at 282.274 kb on + strand, within EX28DRAFT_3622at 282.274 kb on + strand, within EX28DRAFT_3622at 282.274 kb on + strand, within EX28DRAFT_3622at 282.274 kb on + strand, within EX28DRAFT_3622at 282.274 kb on + strand, within EX28DRAFT_3622at 282.275 kb on - strand, within EX28DRAFT_3622at 282.275 kb on - strand, within EX28DRAFT_3622at 282.275 kb on - strand, within EX28DRAFT_3622at 282.477 kb on - strand, within EX28DRAFT_3622at 282.565 kb on + strand, within EX28DRAFT_3622at 282.659 kb on + strand, within EX28DRAFT_3622at 282.923 kb on - strand, within EX28DRAFT_3622at 282.964 kb on + strand, within EX28DRAFT_3622at 283.040 kb on + strand, within EX28DRAFT_3622at 283.066 kb on + strand, within EX28DRAFT_3622at 283.067 kb on - strand, within EX28DRAFT_3622at 283.079 kb on - strand, within EX28DRAFT_3622at 283.153 kb on + strandat 283.154 kb on - strandat 283.154 kb on - strandat 283.157 kb on + strandat 283.157 kb on + strandat 283.184 kb on + strandat 283.185 kb on - strandat 283.319 kb on + strand, within EX28DRAFT_3623at 283.324 kb on - strand, within EX28DRAFT_3623at 283.642 kb on - strand, within EX28DRAFT_3623at 283.643 kb on + strand, within EX28DRAFT_3623at 283.644 kb on - strand, within EX28DRAFT_3623at 283.644 kb on - strand, within EX28DRAFT_3623at 283.803 kb on + strandat 283.803 kb on + strandat 283.803 kb on + strandat 283.804 kb on - strandat 283.804 kb on - strandat 283.815 kb on + strandat 283.815 kb on + strandat 283.816 kb on - strandat 283.838 kb on + strandat 283.839 kb on - strandat 283.841 kb on + strandat 283.841 kb on + strandat 283.869 kb on + strand, within EX28DRAFT_3624at 283.894 kb on + strand, within EX28DRAFT_3624at 283.917 kb on + strand, within EX28DRAFT_3624at 283.992 kb on + strandat 284.060 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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280,959 - EX28DRAFT_3620 0.82 -0.2
280,969 - EX28DRAFT_3620 0.83 -0.7
281,050 + -0.1
281,128 - -0.3
281,165 + -1.7
281,200 + -1.8
281,240 - -1.7
281,245 + +0.0
281,245 + -0.2
281,245 + -0.3
281,250 + +0.3
281,250 + -0.5
281,262 + +0.4
281,262 + +1.2
281,556 + EX28DRAFT_3621 0.54 +2.1
281,556 + EX28DRAFT_3621 0.54 +0.8
281,556 + EX28DRAFT_3621 0.54 -0.5
281,563 - EX28DRAFT_3621 0.55 -0.1
281,724 + EX28DRAFT_3621 0.82 -0.4
281,735 - EX28DRAFT_3621 0.84 -0.4
281,756 + EX28DRAFT_3621 0.88 +0.0
281,756 + EX28DRAFT_3621 0.88 +0.4
281,757 - EX28DRAFT_3621 0.88 -0.6
281,818 - -0.1
281,838 + +1.1
281,838 + -0.3
281,838 + +0.6
281,839 - +1.3
281,849 - +0.0
281,881 - -0.5
281,950 - -0.9
281,958 + -0.8
281,958 + +1.2
281,959 - -0.1
281,959 - +1.4
281,986 + -0.4
282,069 - +0.2
282,205 - EX28DRAFT_3622 0.19 -0.9
282,274 + EX28DRAFT_3622 0.24 +0.1
282,274 + EX28DRAFT_3622 0.24 +0.3
282,274 + EX28DRAFT_3622 0.24 -0.7
282,274 + EX28DRAFT_3622 0.24 -0.2
282,274 + EX28DRAFT_3622 0.24 -0.3
282,274 + EX28DRAFT_3622 0.24 +0.3
282,275 - EX28DRAFT_3622 0.25 -1.4
282,275 - EX28DRAFT_3622 0.25 -1.0
282,275 - EX28DRAFT_3622 0.25 +1.5
282,477 - EX28DRAFT_3622 0.40 +0.1
282,565 + EX28DRAFT_3622 0.46 -0.8
282,659 + EX28DRAFT_3622 0.54 -0.1
282,923 - EX28DRAFT_3622 0.74 -0.4
282,964 + EX28DRAFT_3622 0.77 +0.1
283,040 + EX28DRAFT_3622 0.82 -0.3
283,066 + EX28DRAFT_3622 0.84 -0.8
283,067 - EX28DRAFT_3622 0.84 -0.7
283,079 - EX28DRAFT_3622 0.85 -0.5
283,153 + +0.1
283,154 - +0.5
283,154 - +0.1
283,157 + -0.5
283,157 + +0.0
283,184 + +0.4
283,185 - +0.3
283,319 + EX28DRAFT_3623 0.12 +0.2
283,324 - EX28DRAFT_3623 0.13 -0.1
283,642 - EX28DRAFT_3623 0.69 +1.1
283,643 + EX28DRAFT_3623 0.69 -0.2
283,644 - EX28DRAFT_3623 0.70 +0.5
283,644 - EX28DRAFT_3623 0.70 +0.1
283,803 + -3.2
283,803 + -0.2
283,803 + -0.1
283,804 - -0.2
283,804 - -0.8
283,815 + -0.4
283,815 + -0.5
283,816 - -0.3
283,838 + -2.7
283,839 - -0.1
283,841 + +0.0
283,841 + +1.1
283,869 + EX28DRAFT_3624 0.18 +0.1
283,894 + EX28DRAFT_3624 0.34 +0.7
283,917 + EX28DRAFT_3624 0.49 +0.5
283,992 + +0.4
284,060 + -0.7

Or see this region's nucleotide sequence