Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3487

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3485 and EX28DRAFT_3486 are separated by 146 nucleotidesEX28DRAFT_3486 and EX28DRAFT_3487 are separated by 54 nucleotidesEX28DRAFT_3487 and EX28DRAFT_3488 are separated by 90 nucleotides EX28DRAFT_3485: EX28DRAFT_3485 - hypothetical protein, at 148,263 to 150,107 _3485 EX28DRAFT_3486: EX28DRAFT_3486 - hypothetical protein, at 150,254 to 150,382 _3486 EX28DRAFT_3487: EX28DRAFT_3487 - hypothetical protein, at 150,437 to 150,904 _3487 EX28DRAFT_3488: EX28DRAFT_3488 - Integrase, at 150,995 to 152,245 _3488 Position (kb) 150 151Strain fitness (log2 ratio) -1 0 1 2at 149.437 kb on - strand, within EX28DRAFT_3485at 149.453 kb on - strand, within EX28DRAFT_3485at 149.462 kb on + strand, within EX28DRAFT_3485at 149.522 kb on + strand, within EX28DRAFT_3485at 149.576 kb on - strand, within EX28DRAFT_3485at 149.576 kb on - strand, within EX28DRAFT_3485at 149.591 kb on - strand, within EX28DRAFT_3485at 149.725 kb on - strand, within EX28DRAFT_3485at 149.738 kb on + strand, within EX28DRAFT_3485at 149.868 kb on + strand, within EX28DRAFT_3485at 149.869 kb on - strand, within EX28DRAFT_3485at 149.869 kb on - strand, within EX28DRAFT_3485at 149.869 kb on - strand, within EX28DRAFT_3485at 149.869 kb on - strand, within EX28DRAFT_3485at 149.932 kb on - strandat 149.933 kb on + strandat 149.933 kb on + strandat 149.934 kb on - strandat 149.980 kb on + strandat 149.980 kb on + strandat 149.981 kb on - strandat 149.984 kb on + strandat 149.985 kb on - strandat 150.016 kb on - strandat 150.032 kb on + strandat 150.033 kb on - strandat 150.115 kb on + strandat 150.153 kb on - strandat 150.162 kb on + strandat 150.162 kb on + strandat 150.197 kb on + strandat 150.202 kb on - strandat 150.216 kb on + strandat 150.226 kb on + strandat 150.260 kb on - strandat 150.472 kb on + strandat 150.472 kb on + strandat 150.473 kb on - strandat 150.473 kb on - strandat 150.473 kb on - strandat 150.473 kb on - strandat 150.478 kb on - strandat 150.512 kb on - strand, within EX28DRAFT_3487at 150.649 kb on - strand, within EX28DRAFT_3487at 150.769 kb on - strand, within EX28DRAFT_3487at 150.770 kb on + strand, within EX28DRAFT_3487at 150.956 kb on + strandat 150.997 kb on - strandat 151.023 kb on - strandat 151.035 kb on + strandat 151.074 kb on + strandat 151.075 kb on - strandat 151.115 kb on + strandat 151.115 kb on + strandat 151.116 kb on - strandat 151.285 kb on + strand, within EX28DRAFT_3488at 151.331 kb on + strand, within EX28DRAFT_3488at 151.332 kb on - strand, within EX28DRAFT_3488at 151.332 kb on - strand, within EX28DRAFT_3488at 151.344 kb on + strand, within EX28DRAFT_3488at 151.344 kb on + strand, within EX28DRAFT_3488at 151.446 kb on - strand, within EX28DRAFT_3488at 151.446 kb on - strand, within EX28DRAFT_3488at 151.446 kb on - strand, within EX28DRAFT_3488at 151.478 kb on - strand, within EX28DRAFT_3488at 151.481 kb on + strand, within EX28DRAFT_3488at 151.482 kb on - strand, within EX28DRAFT_3488at 151.512 kb on + strand, within EX28DRAFT_3488at 151.515 kb on + strand, within EX28DRAFT_3488at 151.515 kb on + strand, within EX28DRAFT_3488at 151.515 kb on + strand, within EX28DRAFT_3488at 151.515 kb on + strand, within EX28DRAFT_3488at 151.515 kb on + strand, within EX28DRAFT_3488at 151.516 kb on - strand, within EX28DRAFT_3488at 151.516 kb on - strand, within EX28DRAFT_3488at 151.532 kb on + strand, within EX28DRAFT_3488at 151.533 kb on - strand, within EX28DRAFT_3488at 151.605 kb on + strand, within EX28DRAFT_3488at 151.605 kb on + strand, within EX28DRAFT_3488at 151.619 kb on - strand, within EX28DRAFT_3488at 151.719 kb on + strand, within EX28DRAFT_3488at 151.720 kb on - strand, within EX28DRAFT_3488at 151.775 kb on - strand, within EX28DRAFT_3488at 151.829 kb on + strand, within EX28DRAFT_3488at 151.830 kb on - strand, within EX28DRAFT_3488at 151.841 kb on + strand, within EX28DRAFT_3488at 151.902 kb on + strand, within EX28DRAFT_3488at 151.903 kb on - strand, within EX28DRAFT_3488at 151.903 kb on - strand, within EX28DRAFT_3488

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
remove
149,437 - EX28DRAFT_3485 0.64 +0.3
149,453 - EX28DRAFT_3485 0.64 +0.3
149,462 + EX28DRAFT_3485 0.65 +0.8
149,522 + EX28DRAFT_3485 0.68 -0.6
149,576 - EX28DRAFT_3485 0.71 -1.1
149,576 - EX28DRAFT_3485 0.71 -0.2
149,591 - EX28DRAFT_3485 0.72 +0.2
149,725 - EX28DRAFT_3485 0.79 +0.2
149,738 + EX28DRAFT_3485 0.80 -0.5
149,868 + EX28DRAFT_3485 0.87 -0.4
149,869 - EX28DRAFT_3485 0.87 -0.2
149,869 - EX28DRAFT_3485 0.87 +1.0
149,869 - EX28DRAFT_3485 0.87 +0.1
149,869 - EX28DRAFT_3485 0.87 +0.3
149,932 - -0.9
149,933 + +0.8
149,933 + -1.2
149,934 - +0.4
149,980 + -0.4
149,980 + -0.2
149,981 - -0.5
149,984 + +1.0
149,985 - -0.1
150,016 - -0.4
150,032 + +0.1
150,033 - +1.3
150,115 + +0.7
150,153 - +0.9
150,162 + -0.6
150,162 + +0.1
150,197 + +0.3
150,202 - -0.3
150,216 + +0.1
150,226 + -0.4
150,260 - -0.6
150,472 + -0.9
150,472 + +0.2
150,473 - +0.4
150,473 - +1.9
150,473 - -0.4
150,473 - -0.1
150,478 - +0.2
150,512 - EX28DRAFT_3487 0.16 -0.8
150,649 - EX28DRAFT_3487 0.45 +0.6
150,769 - EX28DRAFT_3487 0.71 -0.7
150,770 + EX28DRAFT_3487 0.71 +0.1
150,956 + +0.7
150,997 - -0.8
151,023 - +0.7
151,035 + +1.7
151,074 + -0.4
151,075 - -0.0
151,115 + +0.0
151,115 + -0.4
151,116 - +0.3
151,285 + EX28DRAFT_3488 0.23 -0.0
151,331 + EX28DRAFT_3488 0.27 +2.6
151,332 - EX28DRAFT_3488 0.27 -0.1
151,332 - EX28DRAFT_3488 0.27 +0.8
151,344 + EX28DRAFT_3488 0.28 -0.2
151,344 + EX28DRAFT_3488 0.28 -0.4
151,446 - EX28DRAFT_3488 0.36 -0.2
151,446 - EX28DRAFT_3488 0.36 -0.1
151,446 - EX28DRAFT_3488 0.36 -0.2
151,478 - EX28DRAFT_3488 0.39 -0.4
151,481 + EX28DRAFT_3488 0.39 -0.2
151,482 - EX28DRAFT_3488 0.39 +0.0
151,512 + EX28DRAFT_3488 0.41 -0.5
151,515 + EX28DRAFT_3488 0.42 -1.1
151,515 + EX28DRAFT_3488 0.42 +0.6
151,515 + EX28DRAFT_3488 0.42 +0.5
151,515 + EX28DRAFT_3488 0.42 +0.4
151,515 + EX28DRAFT_3488 0.42 +0.0
151,516 - EX28DRAFT_3488 0.42 +1.6
151,516 - EX28DRAFT_3488 0.42 -0.3
151,532 + EX28DRAFT_3488 0.43 -0.1
151,533 - EX28DRAFT_3488 0.43 +0.1
151,605 + EX28DRAFT_3488 0.49 -1.0
151,605 + EX28DRAFT_3488 0.49 +1.3
151,619 - EX28DRAFT_3488 0.50 -0.0
151,719 + EX28DRAFT_3488 0.58 +0.0
151,720 - EX28DRAFT_3488 0.58 +0.7
151,775 - EX28DRAFT_3488 0.62 -1.4
151,829 + EX28DRAFT_3488 0.67 +0.1
151,830 - EX28DRAFT_3488 0.67 +0.6
151,841 + EX28DRAFT_3488 0.68 +0.0
151,902 + EX28DRAFT_3488 0.73 +0.2
151,903 - EX28DRAFT_3488 0.73 +0.2
151,903 - EX28DRAFT_3488 0.73 -0.1

Or see this region's nucleotide sequence