Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2426

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2424 and EX28DRAFT_2425 are separated by 19 nucleotidesEX28DRAFT_2425 and EX28DRAFT_2426 are separated by 120 nucleotidesEX28DRAFT_2426 and EX28DRAFT_2427 are separated by 404 nucleotides EX28DRAFT_2424: EX28DRAFT_2424 - transcriptional regulator, TetR family, at 2,450,754 to 2,451,344 _2424 EX28DRAFT_2425: EX28DRAFT_2425 - Uncharacterized protein conserved in bacteria, at 2,451,364 to 2,451,702 _2425 EX28DRAFT_2426: EX28DRAFT_2426 - Nitroreductase, at 2,451,823 to 2,452,476 _2426 EX28DRAFT_2427: EX28DRAFT_2427 - filamentous hemagglutinin family N-terminal domain, at 2,452,881 to 2,455,514 _2427 Position (kb) 2451 2452 2453Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2451.005 kb on + strand, within EX28DRAFT_2424at 2451.027 kb on + strand, within EX28DRAFT_2424at 2451.027 kb on + strand, within EX28DRAFT_2424at 2451.027 kb on + strand, within EX28DRAFT_2424at 2451.028 kb on - strand, within EX28DRAFT_2424at 2451.047 kb on + strand, within EX28DRAFT_2424at 2451.175 kb on + strand, within EX28DRAFT_2424at 2451.176 kb on - strand, within EX28DRAFT_2424at 2451.179 kb on + strand, within EX28DRAFT_2424at 2451.342 kb on + strandat 2451.342 kb on + strandat 2451.432 kb on + strand, within EX28DRAFT_2425at 2451.745 kb on + strandat 2451.745 kb on + strandat 2451.828 kb on + strandat 2451.859 kb on - strandat 2451.929 kb on - strand, within EX28DRAFT_2426at 2451.971 kb on + strand, within EX28DRAFT_2426at 2451.972 kb on - strand, within EX28DRAFT_2426at 2452.024 kb on + strand, within EX28DRAFT_2426at 2452.025 kb on - strand, within EX28DRAFT_2426at 2452.025 kb on - strand, within EX28DRAFT_2426at 2452.025 kb on - strand, within EX28DRAFT_2426at 2452.025 kb on - strand, within EX28DRAFT_2426at 2452.025 kb on - strand, within EX28DRAFT_2426at 2452.190 kb on - strand, within EX28DRAFT_2426at 2452.190 kb on - strand, within EX28DRAFT_2426at 2452.190 kb on - strand, within EX28DRAFT_2426at 2452.522 kb on + strandat 2452.522 kb on + strandat 2452.523 kb on - strandat 2452.523 kb on - strandat 2452.523 kb on - strandat 2452.524 kb on + strandat 2452.539 kb on + strandat 2452.540 kb on - strandat 2452.540 kb on - strandat 2452.623 kb on + strandat 2452.624 kb on - strandat 2452.749 kb on + strandat 2452.818 kb on - strandat 2452.875 kb on - strandat 2452.875 kb on - strandat 2452.879 kb on - strandat 2452.881 kb on - strandat 2452.881 kb on - strandat 2452.913 kb on + strandat 2452.914 kb on - strandat 2452.928 kb on - strandat 2453.201 kb on + strand, within EX28DRAFT_2427at 2453.204 kb on + strand, within EX28DRAFT_2427at 2453.204 kb on + strand, within EX28DRAFT_2427at 2453.205 kb on - strand, within EX28DRAFT_2427at 2453.242 kb on + strand, within EX28DRAFT_2427at 2453.243 kb on - strand, within EX28DRAFT_2427at 2453.394 kb on + strand, within EX28DRAFT_2427at 2453.395 kb on - strand, within EX28DRAFT_2427at 2453.399 kb on + strand, within EX28DRAFT_2427at 2453.433 kb on - strand, within EX28DRAFT_2427at 2453.433 kb on - strand, within EX28DRAFT_2427

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
remove
2,451,005 + EX28DRAFT_2424 0.42 -1.9
2,451,027 + EX28DRAFT_2424 0.46 -1.1
2,451,027 + EX28DRAFT_2424 0.46 -1.6
2,451,027 + EX28DRAFT_2424 0.46 -0.6
2,451,028 - EX28DRAFT_2424 0.46 -0.2
2,451,047 + EX28DRAFT_2424 0.50 -1.4
2,451,175 + EX28DRAFT_2424 0.71 -0.0
2,451,176 - EX28DRAFT_2424 0.71 -0.2
2,451,179 + EX28DRAFT_2424 0.72 +1.4
2,451,342 + +0.3
2,451,342 + -0.2
2,451,432 + EX28DRAFT_2425 0.20 -2.0
2,451,745 + +0.4
2,451,745 + +0.9
2,451,828 + +0.6
2,451,859 - +0.2
2,451,929 - EX28DRAFT_2426 0.16 -0.8
2,451,971 + EX28DRAFT_2426 0.23 +0.4
2,451,972 - EX28DRAFT_2426 0.23 +2.0
2,452,024 + EX28DRAFT_2426 0.31 +0.2
2,452,025 - EX28DRAFT_2426 0.31 -0.3
2,452,025 - EX28DRAFT_2426 0.31 -3.7
2,452,025 - EX28DRAFT_2426 0.31 -0.4
2,452,025 - EX28DRAFT_2426 0.31 +0.9
2,452,025 - EX28DRAFT_2426 0.31 -0.0
2,452,190 - EX28DRAFT_2426 0.56 +0.4
2,452,190 - EX28DRAFT_2426 0.56 +0.1
2,452,190 - EX28DRAFT_2426 0.56 +0.2
2,452,522 + +0.2
2,452,522 + -0.5
2,452,523 - -1.4
2,452,523 - +0.3
2,452,523 - +1.7
2,452,524 + +1.8
2,452,539 + +0.2
2,452,540 - -0.2
2,452,540 - -0.1
2,452,623 + +0.1
2,452,624 - +0.7
2,452,749 + +0.7
2,452,818 - +0.0
2,452,875 - +0.5
2,452,875 - +1.0
2,452,879 - +0.3
2,452,881 - +0.8
2,452,881 - -1.0
2,452,913 + -1.5
2,452,914 - +0.6
2,452,928 - +2.0
2,453,201 + EX28DRAFT_2427 0.12 -0.2
2,453,204 + EX28DRAFT_2427 0.12 -0.2
2,453,204 + EX28DRAFT_2427 0.12 +0.1
2,453,205 - EX28DRAFT_2427 0.12 -1.2
2,453,242 + EX28DRAFT_2427 0.14 +0.5
2,453,243 - EX28DRAFT_2427 0.14 +0.7
2,453,394 + EX28DRAFT_2427 0.19 -0.6
2,453,395 - EX28DRAFT_2427 0.20 -0.3
2,453,399 + EX28DRAFT_2427 0.20 -0.3
2,453,433 - EX28DRAFT_2427 0.21 -0.4
2,453,433 - EX28DRAFT_2427 0.21 -0.0

Or see this region's nucleotide sequence