Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2267

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2266 and EX28DRAFT_2267 are separated by 266 nucleotidesEX28DRAFT_2267 and EX28DRAFT_2268 are separated by 15 nucleotides EX28DRAFT_2266: EX28DRAFT_2266 - 2-oxoglutarate dehydrogenase, E1 component, at 2,288,679 to 2,291,486 _2266 EX28DRAFT_2267: EX28DRAFT_2267 - succinate dehydrogenase and fumarate reductase iron-sulfur protein, at 2,291,753 to 2,292,469 _2267 EX28DRAFT_2268: EX28DRAFT_2268 - succinate dehydrogenase subunit A (EC 1.3.5.1), at 2,292,485 to 2,294,251 _2268 Position (kb) 2291 2292 2293Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2291.507 kb on + strandat 2291.508 kb on - strandat 2291.549 kb on + strandat 2291.549 kb on + strandat 2291.550 kb on - strandat 2291.599 kb on + strandat 2291.600 kb on - strandat 2291.621 kb on - strandat 2291.755 kb on - strandat 2291.782 kb on + strandat 2291.861 kb on + strand, within EX28DRAFT_2267at 2291.862 kb on - strand, within EX28DRAFT_2267at 2292.022 kb on + strand, within EX28DRAFT_2267at 2292.022 kb on + strand, within EX28DRAFT_2267at 2292.031 kb on - strand, within EX28DRAFT_2267at 2292.328 kb on + strand, within EX28DRAFT_2267at 2292.353 kb on + strand, within EX28DRAFT_2267at 2292.486 kb on + strandat 2292.493 kb on + strandat 2292.701 kb on - strand, within EX28DRAFT_2268at 2292.854 kb on - strand, within EX28DRAFT_2268at 2292.854 kb on - strand, within EX28DRAFT_2268at 2292.854 kb on - strand, within EX28DRAFT_2268at 2292.854 kb on - strand, within EX28DRAFT_2268at 2292.854 kb on - strand, within EX28DRAFT_2268at 2293.070 kb on + strand, within EX28DRAFT_2268at 2293.189 kb on - strand, within EX28DRAFT_2268at 2293.425 kb on + strand, within EX28DRAFT_2268

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,291,507 + -3.0
2,291,508 - -3.7
2,291,549 + -3.2
2,291,549 + -2.6
2,291,550 - -3.7
2,291,599 + -4.2
2,291,600 - -1.1
2,291,621 - -1.2
2,291,755 - +1.3
2,291,782 + -2.5
2,291,861 + EX28DRAFT_2267 0.15 -0.7
2,291,862 - EX28DRAFT_2267 0.15 -1.3
2,292,022 + EX28DRAFT_2267 0.38 -3.4
2,292,022 + EX28DRAFT_2267 0.38 -3.6
2,292,031 - EX28DRAFT_2267 0.39 -2.4
2,292,328 + EX28DRAFT_2267 0.80 -2.7
2,292,353 + EX28DRAFT_2267 0.84 -3.8
2,292,486 + -3.3
2,292,493 + -2.3
2,292,701 - EX28DRAFT_2268 0.12 -0.9
2,292,854 - EX28DRAFT_2268 0.21 -1.5
2,292,854 - EX28DRAFT_2268 0.21 +0.3
2,292,854 - EX28DRAFT_2268 0.21 -0.7
2,292,854 - EX28DRAFT_2268 0.21 -1.3
2,292,854 - EX28DRAFT_2268 0.21 -0.1
2,293,070 + EX28DRAFT_2268 0.33 -1.6
2,293,189 - EX28DRAFT_2268 0.40 -1.7
2,293,425 + EX28DRAFT_2268 0.53 -2.3

Or see this region's nucleotide sequence