Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2258

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2254 and EX28DRAFT_2255 overlap by 4 nucleotidesEX28DRAFT_2255 and EX28DRAFT_2256 are separated by 148 nucleotidesEX28DRAFT_2256 and EX28DRAFT_2257 overlap by 1 nucleotidesEX28DRAFT_2257 and EX28DRAFT_2258 are separated by 14 nucleotidesEX28DRAFT_2258 and EX28DRAFT_2259 are separated by 15 nucleotides EX28DRAFT_2254: EX28DRAFT_2254 - TolQ protein, at 2,274,723 to 2,275,415 _2254 EX28DRAFT_2255: EX28DRAFT_2255 - tol-pal system-associated acyl-CoA thioesterase, at 2,275,412 to 2,275,816 _2255 EX28DRAFT_2256: EX28DRAFT_2256 - cyd operon protein YbgE, at 2,275,965 to 2,276,255 _2256 EX28DRAFT_2257: EX28DRAFT_2257 - cyd operon protein YbgT, at 2,276,255 to 2,276,368 _2257 EX28DRAFT_2258: EX28DRAFT_2258 - cytochrome d oxidase, subunit II (cydB), at 2,276,383 to 2,277,522 _2258 EX28DRAFT_2259: EX28DRAFT_2259 - Cytochrome bd-type quinol oxidase, subunit 1, at 2,277,538 to 2,279,106 _2259 Position (kb) 2276 2277 2278Strain fitness (log2 ratio) -2 -1 0 1at 2275.464 kb on - strand, within EX28DRAFT_2255at 2275.682 kb on + strand, within EX28DRAFT_2255at 2275.735 kb on - strand, within EX28DRAFT_2255at 2275.735 kb on - strand, within EX28DRAFT_2255at 2275.780 kb on - strandat 2275.780 kb on - strandat 2275.820 kb on - strandat 2275.867 kb on - strandat 2275.867 kb on - strandat 2275.867 kb on - strandat 2275.867 kb on - strandat 2275.868 kb on + strandat 2275.869 kb on - strandat 2275.963 kb on - strandat 2276.096 kb on + strand, within EX28DRAFT_2256at 2276.097 kb on - strand, within EX28DRAFT_2256at 2276.165 kb on + strand, within EX28DRAFT_2256at 2276.166 kb on - strand, within EX28DRAFT_2256at 2276.166 kb on - strand, within EX28DRAFT_2256at 2276.166 kb on - strand, within EX28DRAFT_2256at 2276.182 kb on - strand, within EX28DRAFT_2256at 2276.233 kb on + strandat 2276.234 kb on - strandat 2276.381 kb on - strandat 2276.381 kb on - strandat 2276.385 kb on - strandat 2276.388 kb on - strandat 2276.391 kb on + strandat 2276.498 kb on + strand, within EX28DRAFT_2258at 2276.521 kb on - strand, within EX28DRAFT_2258at 2276.745 kb on + strand, within EX28DRAFT_2258at 2278.102 kb on - strand, within EX28DRAFT_2259

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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2,275,464 - EX28DRAFT_2255 0.13 +0.5
2,275,682 + EX28DRAFT_2255 0.67 -0.8
2,275,735 - EX28DRAFT_2255 0.80 +0.0
2,275,735 - EX28DRAFT_2255 0.80 -0.5
2,275,780 - -1.9
2,275,780 - +0.2
2,275,820 - -0.4
2,275,867 - -0.1
2,275,867 - -0.9
2,275,867 - +0.1
2,275,867 - +0.0
2,275,868 + -0.4
2,275,869 - +0.0
2,275,963 - +0.7
2,276,096 + EX28DRAFT_2256 0.45 +0.2
2,276,097 - EX28DRAFT_2256 0.45 -0.8
2,276,165 + EX28DRAFT_2256 0.69 +1.0
2,276,166 - EX28DRAFT_2256 0.69 +0.2
2,276,166 - EX28DRAFT_2256 0.69 -0.5
2,276,166 - EX28DRAFT_2256 0.69 -0.2
2,276,182 - EX28DRAFT_2256 0.75 -0.7
2,276,233 + +0.7
2,276,234 - -0.4
2,276,381 - +0.2
2,276,381 - -1.1
2,276,385 - -0.1
2,276,388 - -1.8
2,276,391 + -1.5
2,276,498 + EX28DRAFT_2258 0.10 -0.4
2,276,521 - EX28DRAFT_2258 0.12 -1.6
2,276,745 + EX28DRAFT_2258 0.32 -1.0
2,278,102 - EX28DRAFT_2259 0.36 -2.7

Or see this region's nucleotide sequence