Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2040

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_2039 and EX28DRAFT_2040 are separated by 92 nucleotidesEX28DRAFT_2040 and EX28DRAFT_2041 are separated by 9 nucleotidesEX28DRAFT_2041 and EX28DRAFT_2042 are separated by 128 nucleotides EX28DRAFT_2039: EX28DRAFT_2039 - seryl-tRNA synthetase (EC 6.1.1.11), at 2,055,092 to 2,056,384 _2039 EX28DRAFT_2040: EX28DRAFT_2040 - ATPase related to the helicase subunit of the Holliday junction resolvase, at 2,056,477 to 2,057,820 _2040 EX28DRAFT_2041: EX28DRAFT_2041 - periplasmic chaperone LolA, at 2,057,830 to 2,058,444 _2041 EX28DRAFT_2042: EX28DRAFT_2042 - DNA segregation ATPase FtsK/SpoIIIE and related proteins, at 2,058,573 to 2,062,274 _2042 Position (kb) 2056 2057 2058Strain fitness (log2 ratio) -1 0 1 2at 2056.575 kb on - strandat 2056.782 kb on + strand, within EX28DRAFT_2040at 2056.952 kb on + strand, within EX28DRAFT_2040at 2056.953 kb on - strand, within EX28DRAFT_2040at 2056.953 kb on - strand, within EX28DRAFT_2040at 2056.953 kb on - strand, within EX28DRAFT_2040at 2056.955 kb on - strand, within EX28DRAFT_2040at 2056.955 kb on - strand, within EX28DRAFT_2040at 2057.342 kb on + strand, within EX28DRAFT_2040at 2057.433 kb on + strand, within EX28DRAFT_2040at 2057.706 kb on + strandat 2057.739 kb on - strandat 2057.832 kb on - strandat 2057.832 kb on - strandat 2057.835 kb on + strandat 2057.836 kb on - strandat 2058.461 kb on - strandat 2058.492 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
remove
2,056,575 - -0.3
2,056,782 + EX28DRAFT_2040 0.23 +0.7
2,056,952 + EX28DRAFT_2040 0.35 -0.6
2,056,953 - EX28DRAFT_2040 0.35 +0.5
2,056,953 - EX28DRAFT_2040 0.35 +0.3
2,056,953 - EX28DRAFT_2040 0.35 +0.1
2,056,955 - EX28DRAFT_2040 0.36 +0.6
2,056,955 - EX28DRAFT_2040 0.36 +0.4
2,057,342 + EX28DRAFT_2040 0.64 +0.3
2,057,433 + EX28DRAFT_2040 0.71 -0.2
2,057,706 + -0.1
2,057,739 - +1.1
2,057,832 - +0.3
2,057,832 - +0.2
2,057,835 + +1.2
2,057,836 - +1.8
2,058,461 - -0.2
2,058,492 - +0.3

Or see this region's nucleotide sequence