Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2039 and EX28DRAFT_2040 are separated by 92 nucleotides EX28DRAFT_2040 and EX28DRAFT_2041 are separated by 9 nucleotides EX28DRAFT_2041 and EX28DRAFT_2042 are separated by 128 nucleotides
EX28DRAFT_2039: EX28DRAFT_2039 - seryl-tRNA synthetase (EC 6.1.1.11), at 2,055,092 to 2,056,384
_2039
EX28DRAFT_2040: EX28DRAFT_2040 - ATPase related to the helicase subunit of the Holliday junction resolvase, at 2,056,477 to 2,057,820
_2040
EX28DRAFT_2041: EX28DRAFT_2041 - periplasmic chaperone LolA, at 2,057,830 to 2,058,444
_2041
EX28DRAFT_2042: EX28DRAFT_2042 - DNA segregation ATPase FtsK/SpoIIIE and related proteins, at 2,058,573 to 2,062,274
_2042
Position (kb)
2056
2057
2058 Strain fitness (log2 ratio)
-1
0
1
2 at 2056.575 kb on - strand at 2056.782 kb on + strand, within EX28DRAFT_2040 at 2056.952 kb on + strand, within EX28DRAFT_2040 at 2056.953 kb on - strand, within EX28DRAFT_2040 at 2056.953 kb on - strand, within EX28DRAFT_2040 at 2056.953 kb on - strand, within EX28DRAFT_2040 at 2056.955 kb on - strand, within EX28DRAFT_2040 at 2056.955 kb on - strand, within EX28DRAFT_2040 at 2057.342 kb on + strand, within EX28DRAFT_2040 at 2057.433 kb on + strand, within EX28DRAFT_2040 at 2057.706 kb on + strand at 2057.739 kb on - strand at 2057.832 kb on - strand at 2057.832 kb on - strand at 2057.835 kb on + strand at 2057.836 kb on - strand at 2058.461 kb on - strand at 2058.492 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 2,056,575 - -0.3 2,056,782 + EX28DRAFT_2040 0.23 +0.7 2,056,952 + EX28DRAFT_2040 0.35 -0.6 2,056,953 - EX28DRAFT_2040 0.35 +0.5 2,056,953 - EX28DRAFT_2040 0.35 +0.3 2,056,953 - EX28DRAFT_2040 0.35 +0.1 2,056,955 - EX28DRAFT_2040 0.36 +0.6 2,056,955 - EX28DRAFT_2040 0.36 +0.4 2,057,342 + EX28DRAFT_2040 0.64 +0.3 2,057,433 + EX28DRAFT_2040 0.71 -0.2 2,057,706 + -0.1 2,057,739 - +1.1 2,057,832 - +0.3 2,057,832 - +0.2 2,057,835 + +1.2 2,057,836 - +1.8 2,058,461 - -0.2 2,058,492 - +0.3
Or see this region's nucleotide sequence