Experiment: M9 with casaminos and trichloroethylene 76.3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1068 and EX28DRAFT_1069 are separated by 68 nucleotides EX28DRAFT_1069 and EX28DRAFT_1070 are separated by 116 nucleotides
EX28DRAFT_1068: EX28DRAFT_1068 - Arylamine N-acetyltransferase, at 1,079,772 to 1,080,617
_1068
EX28DRAFT_1069: EX28DRAFT_1069 - transcriptional regulator, TetR family, at 1,080,686 to 1,081,279
_1069
EX28DRAFT_1070: EX28DRAFT_1070 - Arabinose efflux permease, at 1,081,396 to 1,082,883
_1070
Position (kb)
1080
1081
1082 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1079.690 kb on + strand at 1079.707 kb on + strand at 1079.736 kb on + strand at 1079.739 kb on - strand at 1079.771 kb on + strand at 1079.771 kb on + strand at 1079.771 kb on + strand at 1079.771 kb on + strand at 1079.771 kb on + strand at 1079.771 kb on + strand at 1079.771 kb on + strand at 1079.771 kb on + strand at 1079.772 kb on - strand at 1079.772 kb on - strand at 1079.772 kb on - strand at 1079.772 kb on - strand at 1079.860 kb on + strand, within EX28DRAFT_1068 at 1079.860 kb on + strand, within EX28DRAFT_1068 at 1079.860 kb on + strand, within EX28DRAFT_1068 at 1079.861 kb on - strand, within EX28DRAFT_1068 at 1079.861 kb on - strand, within EX28DRAFT_1068 at 1079.891 kb on + strand, within EX28DRAFT_1068 at 1079.891 kb on + strand, within EX28DRAFT_1068 at 1079.892 kb on - strand, within EX28DRAFT_1068 at 1079.974 kb on - strand, within EX28DRAFT_1068 at 1080.216 kb on + strand, within EX28DRAFT_1068 at 1080.309 kb on + strand, within EX28DRAFT_1068 at 1080.309 kb on + strand, within EX28DRAFT_1068 at 1080.461 kb on - strand, within EX28DRAFT_1068 at 1080.461 kb on - strand, within EX28DRAFT_1068 at 1080.461 kb on - strand, within EX28DRAFT_1068 at 1080.461 kb on - strand, within EX28DRAFT_1068 at 1080.496 kb on + strand, within EX28DRAFT_1068 at 1080.497 kb on - strand, within EX28DRAFT_1068 at 1080.499 kb on - strand, within EX28DRAFT_1068 at 1080.499 kb on - strand, within EX28DRAFT_1068 at 1080.499 kb on - strand, within EX28DRAFT_1068 at 1080.505 kb on + strand, within EX28DRAFT_1068 at 1080.651 kb on + strand at 1080.652 kb on - strand at 1080.652 kb on - strand at 1080.776 kb on + strand, within EX28DRAFT_1069 at 1080.783 kb on + strand, within EX28DRAFT_1069 at 1080.784 kb on - strand, within EX28DRAFT_1069 at 1080.784 kb on - strand, within EX28DRAFT_1069 at 1080.784 kb on - strand, within EX28DRAFT_1069 at 1080.784 kb on - strand, within EX28DRAFT_1069 at 1080.784 kb on - strand, within EX28DRAFT_1069 at 1080.813 kb on - strand, within EX28DRAFT_1069 at 1080.917 kb on - strand, within EX28DRAFT_1069 at 1080.991 kb on - strand, within EX28DRAFT_1069 at 1081.098 kb on - strand, within EX28DRAFT_1069 at 1081.133 kb on - strand, within EX28DRAFT_1069 at 1081.238 kb on + strand at 1081.238 kb on + strand at 1081.331 kb on - strand at 1081.331 kb on - strand at 1081.331 kb on - strand at 1081.438 kb on + strand at 1081.438 kb on + strand at 1081.438 kb on + strand at 1081.438 kb on + strand at 1081.438 kb on + strand at 1081.439 kb on - strand at 1081.439 kb on - strand at 1081.439 kb on - strand at 1081.439 kb on - strand at 1081.539 kb on + strand at 1081.728 kb on + strand, within EX28DRAFT_1070 at 1081.783 kb on - strand, within EX28DRAFT_1070 at 1081.889 kb on + strand, within EX28DRAFT_1070 at 1081.978 kb on - strand, within EX28DRAFT_1070 at 1081.993 kb on - strand, within EX28DRAFT_1070 at 1082.024 kb on - strand, within EX28DRAFT_1070 at 1082.107 kb on - strand, within EX28DRAFT_1070 at 1082.271 kb on + strand, within EX28DRAFT_1070 at 1082.272 kb on - strand, within EX28DRAFT_1070
Per-strain Table
Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM remove 1,079,690 + -1.8 1,079,707 + -1.0 1,079,736 + +0.0 1,079,739 - +1.0 1,079,771 + -0.0 1,079,771 + +0.8 1,079,771 + -0.8 1,079,771 + -0.6 1,079,771 + -1.5 1,079,771 + +1.2 1,079,771 + -0.6 1,079,771 + +0.4 1,079,772 - -0.1 1,079,772 - +0.5 1,079,772 - -0.3 1,079,772 - -0.4 1,079,860 + EX28DRAFT_1068 0.10 +1.2 1,079,860 + EX28DRAFT_1068 0.10 -0.9 1,079,860 + EX28DRAFT_1068 0.10 -0.1 1,079,861 - EX28DRAFT_1068 0.11 -0.3 1,079,861 - EX28DRAFT_1068 0.11 +0.1 1,079,891 + EX28DRAFT_1068 0.14 +0.2 1,079,891 + EX28DRAFT_1068 0.14 +0.6 1,079,892 - EX28DRAFT_1068 0.14 -0.3 1,079,974 - EX28DRAFT_1068 0.24 +0.8 1,080,216 + EX28DRAFT_1068 0.52 -0.5 1,080,309 + EX28DRAFT_1068 0.63 -0.6 1,080,309 + EX28DRAFT_1068 0.63 +1.0 1,080,461 - EX28DRAFT_1068 0.81 -2.3 1,080,461 - EX28DRAFT_1068 0.81 -0.3 1,080,461 - EX28DRAFT_1068 0.81 -1.2 1,080,461 - EX28DRAFT_1068 0.81 -1.0 1,080,496 + EX28DRAFT_1068 0.86 -0.7 1,080,497 - EX28DRAFT_1068 0.86 +0.1 1,080,499 - EX28DRAFT_1068 0.86 +0.4 1,080,499 - EX28DRAFT_1068 0.86 -0.3 1,080,499 - EX28DRAFT_1068 0.86 -0.2 1,080,505 + EX28DRAFT_1068 0.87 +0.7 1,080,651 + +1.4 1,080,652 - -0.2 1,080,652 - +0.5 1,080,776 + EX28DRAFT_1069 0.15 -0.8 1,080,783 + EX28DRAFT_1069 0.16 -2.3 1,080,784 - EX28DRAFT_1069 0.16 -0.7 1,080,784 - EX28DRAFT_1069 0.16 -0.3 1,080,784 - EX28DRAFT_1069 0.16 -1.2 1,080,784 - EX28DRAFT_1069 0.16 -0.4 1,080,784 - EX28DRAFT_1069 0.16 +0.4 1,080,813 - EX28DRAFT_1069 0.21 -0.5 1,080,917 - EX28DRAFT_1069 0.39 -1.8 1,080,991 - EX28DRAFT_1069 0.51 +2.6 1,081,098 - EX28DRAFT_1069 0.69 -0.2 1,081,133 - EX28DRAFT_1069 0.75 -1.2 1,081,238 + +0.6 1,081,238 + -0.1 1,081,331 - -0.4 1,081,331 - +1.0 1,081,331 - -0.3 1,081,438 + -0.8 1,081,438 + +0.1 1,081,438 + +0.3 1,081,438 + -0.4 1,081,438 + -0.8 1,081,439 - -1.3 1,081,439 - +0.4 1,081,439 - -1.8 1,081,439 - -0.8 1,081,539 + -0.0 1,081,728 + EX28DRAFT_1070 0.22 +0.1 1,081,783 - EX28DRAFT_1070 0.26 +0.0 1,081,889 + EX28DRAFT_1070 0.33 -0.4 1,081,978 - EX28DRAFT_1070 0.39 +0.3 1,081,993 - EX28DRAFT_1070 0.40 +0.0 1,082,024 - EX28DRAFT_1070 0.42 -0.2 1,082,107 - EX28DRAFT_1070 0.48 +0.9 1,082,271 + EX28DRAFT_1070 0.59 +0.1 1,082,272 - EX28DRAFT_1070 0.59 -0.2
Or see this region's nucleotide sequence