Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0991

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0990 and EX28DRAFT_0991 are separated by 34 nucleotidesEX28DRAFT_0991 and EX28DRAFT_0992 are separated by 155 nucleotides EX28DRAFT_0990: EX28DRAFT_0990 - Outer membrane protein G (OmpG), at 992,130 to 993,044 _0990 EX28DRAFT_0991: EX28DRAFT_0991 - transcriptional regulator, LacI family, at 993,079 to 994,089 _0991 EX28DRAFT_0992: EX28DRAFT_0992 - Predicted ATPase, at 994,245 to 995,642 _0992 Position (kb) 993 994 995Strain fitness (log2 ratio) -2 -1 0 1 2 3at 992.113 kb on + strandat 992.116 kb on - strandat 992.136 kb on - strandat 992.144 kb on - strandat 992.235 kb on + strand, within EX28DRAFT_0990at 992.281 kb on + strand, within EX28DRAFT_0990at 992.283 kb on + strand, within EX28DRAFT_0990at 992.283 kb on + strand, within EX28DRAFT_0990at 992.283 kb on + strand, within EX28DRAFT_0990at 992.283 kb on + strand, within EX28DRAFT_0990at 992.284 kb on - strand, within EX28DRAFT_0990at 992.373 kb on - strand, within EX28DRAFT_0990at 992.413 kb on + strand, within EX28DRAFT_0990at 992.413 kb on + strand, within EX28DRAFT_0990at 992.414 kb on - strand, within EX28DRAFT_0990at 992.414 kb on - strand, within EX28DRAFT_0990at 992.490 kb on - strand, within EX28DRAFT_0990at 992.562 kb on - strand, within EX28DRAFT_0990at 992.604 kb on + strand, within EX28DRAFT_0990at 992.750 kb on + strand, within EX28DRAFT_0990at 992.750 kb on + strand, within EX28DRAFT_0990at 992.751 kb on - strand, within EX28DRAFT_0990at 992.788 kb on - strand, within EX28DRAFT_0990at 992.795 kb on + strand, within EX28DRAFT_0990at 992.796 kb on - strand, within EX28DRAFT_0990at 992.826 kb on + strand, within EX28DRAFT_0990at 992.920 kb on - strand, within EX28DRAFT_0990at 992.920 kb on - strand, within EX28DRAFT_0990at 992.920 kb on - strand, within EX28DRAFT_0990at 992.925 kb on + strand, within EX28DRAFT_0990at 992.926 kb on - strand, within EX28DRAFT_0990at 992.961 kb on + strandat 993.151 kb on - strandat 993.322 kb on + strand, within EX28DRAFT_0991at 993.322 kb on + strand, within EX28DRAFT_0991at 993.322 kb on + strand, within EX28DRAFT_0991at 993.323 kb on - strand, within EX28DRAFT_0991at 993.377 kb on - strand, within EX28DRAFT_0991at 993.712 kb on + strand, within EX28DRAFT_0991at 993.713 kb on - strand, within EX28DRAFT_0991at 993.791 kb on - strand, within EX28DRAFT_0991at 993.795 kb on + strand, within EX28DRAFT_0991at 994.073 kb on + strandat 994.073 kb on + strandat 994.074 kb on - strandat 994.074 kb on - strandat 994.074 kb on - strandat 994.089 kb on + strandat 994.089 kb on + strandat 994.157 kb on + strandat 994.157 kb on + strandat 994.157 kb on + strandat 994.485 kb on + strand, within EX28DRAFT_0992at 994.509 kb on + strand, within EX28DRAFT_0992at 995.029 kb on - strand, within EX28DRAFT_0992at 995.031 kb on + strand, within EX28DRAFT_0992at 995.031 kb on + strand, within EX28DRAFT_0992at 995.059 kb on - strand, within EX28DRAFT_0992

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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992,113 + +0.2
992,116 - -0.1
992,136 - +0.7
992,144 - +0.2
992,235 + EX28DRAFT_0990 0.11 +0.6
992,281 + EX28DRAFT_0990 0.17 +0.5
992,283 + EX28DRAFT_0990 0.17 +0.7
992,283 + EX28DRAFT_0990 0.17 -0.8
992,283 + EX28DRAFT_0990 0.17 -2.1
992,283 + EX28DRAFT_0990 0.17 -0.5
992,284 - EX28DRAFT_0990 0.17 -0.0
992,373 - EX28DRAFT_0990 0.27 +0.3
992,413 + EX28DRAFT_0990 0.31 -0.6
992,413 + EX28DRAFT_0990 0.31 +1.1
992,414 - EX28DRAFT_0990 0.31 +0.8
992,414 - EX28DRAFT_0990 0.31 -2.5
992,490 - EX28DRAFT_0990 0.39 +0.3
992,562 - EX28DRAFT_0990 0.47 -1.1
992,604 + EX28DRAFT_0990 0.52 +0.2
992,750 + EX28DRAFT_0990 0.68 -0.4
992,750 + EX28DRAFT_0990 0.68 -0.4
992,751 - EX28DRAFT_0990 0.68 +1.2
992,788 - EX28DRAFT_0990 0.72 -0.1
992,795 + EX28DRAFT_0990 0.73 -0.1
992,796 - EX28DRAFT_0990 0.73 +0.1
992,826 + EX28DRAFT_0990 0.76 +0.1
992,920 - EX28DRAFT_0990 0.86 +0.3
992,920 - EX28DRAFT_0990 0.86 -0.4
992,920 - EX28DRAFT_0990 0.86 -0.7
992,925 + EX28DRAFT_0990 0.87 +0.9
992,926 - EX28DRAFT_0990 0.87 -1.1
992,961 + +0.0
993,151 - +0.8
993,322 + EX28DRAFT_0991 0.24 -0.5
993,322 + EX28DRAFT_0991 0.24 -1.1
993,322 + EX28DRAFT_0991 0.24 -0.6
993,323 - EX28DRAFT_0991 0.24 -1.7
993,377 - EX28DRAFT_0991 0.29 -0.1
993,712 + EX28DRAFT_0991 0.63 -0.3
993,713 - EX28DRAFT_0991 0.63 -0.2
993,791 - EX28DRAFT_0991 0.70 -0.9
993,795 + EX28DRAFT_0991 0.71 +0.3
994,073 + -0.5
994,073 + -0.8
994,074 - -0.4
994,074 - -0.6
994,074 - -0.4
994,089 + -1.7
994,089 + +2.9
994,157 + -0.5
994,157 + +0.6
994,157 + -0.0
994,485 + EX28DRAFT_0992 0.17 -2.0
994,509 + EX28DRAFT_0992 0.19 -2.4
995,029 - EX28DRAFT_0992 0.56 -0.0
995,031 + EX28DRAFT_0992 0.56 -0.1
995,031 + EX28DRAFT_0992 0.56 -0.4
995,059 - EX28DRAFT_0992 0.58 +0.0

Or see this region's nucleotide sequence