Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0661

Experiment: M9 with casaminos and trichloroethylene 76.3 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0660 and EX28DRAFT_0661 overlap by 4 nucleotidesEX28DRAFT_0661 and EX28DRAFT_0662 are separated by 4 nucleotides EX28DRAFT_0660: EX28DRAFT_0660 - flagellar motor stator protein MotA, at 654,207 to 655,094 _0660 EX28DRAFT_0661: EX28DRAFT_0661 - Flagellar motor protein, at 655,091 to 656,020 _0661 EX28DRAFT_0662: EX28DRAFT_0662 - Chemotaxis protein histidine kinase and related kinases, at 656,025 to 658,061 _0662 Position (kb) 655 656 657Strain fitness (log2 ratio) -3 -2 -1 0 1at 654.123 kb on + strandat 654.123 kb on + strandat 654.182 kb on + strandat 654.213 kb on - strandat 654.213 kb on - strandat 654.218 kb on - strandat 654.220 kb on + strandat 654.220 kb on + strandat 654.220 kb on + strandat 654.221 kb on - strandat 654.221 kb on - strandat 654.232 kb on + strandat 654.232 kb on + strandat 654.258 kb on + strandat 654.291 kb on + strandat 654.292 kb on - strandat 654.292 kb on - strandat 654.308 kb on + strand, within EX28DRAFT_0660at 654.309 kb on - strand, within EX28DRAFT_0660at 654.309 kb on - strand, within EX28DRAFT_0660at 654.311 kb on + strand, within EX28DRAFT_0660at 654.342 kb on - strand, within EX28DRAFT_0660at 654.359 kb on + strand, within EX28DRAFT_0660at 654.360 kb on - strand, within EX28DRAFT_0660at 654.414 kb on + strand, within EX28DRAFT_0660at 654.414 kb on + strand, within EX28DRAFT_0660at 654.425 kb on + strand, within EX28DRAFT_0660at 654.426 kb on - strand, within EX28DRAFT_0660at 654.426 kb on - strand, within EX28DRAFT_0660at 654.426 kb on - strand, within EX28DRAFT_0660at 654.426 kb on - strand, within EX28DRAFT_0660at 654.426 kb on - strand, within EX28DRAFT_0660at 654.429 kb on + strand, within EX28DRAFT_0660at 654.429 kb on + strand, within EX28DRAFT_0660at 654.429 kb on + strand, within EX28DRAFT_0660at 654.429 kb on + strand, within EX28DRAFT_0660at 654.430 kb on - strand, within EX28DRAFT_0660at 654.430 kb on - strand, within EX28DRAFT_0660at 654.430 kb on - strand, within EX28DRAFT_0660at 654.430 kb on - strand, within EX28DRAFT_0660at 654.431 kb on + strand, within EX28DRAFT_0660at 654.431 kb on + strand, within EX28DRAFT_0660at 654.432 kb on - strand, within EX28DRAFT_0660at 654.432 kb on - strand, within EX28DRAFT_0660at 654.432 kb on - strand, within EX28DRAFT_0660at 654.432 kb on - strand, within EX28DRAFT_0660at 654.510 kb on + strand, within EX28DRAFT_0660at 654.544 kb on - strand, within EX28DRAFT_0660at 654.623 kb on + strand, within EX28DRAFT_0660at 654.624 kb on - strand, within EX28DRAFT_0660at 654.624 kb on - strand, within EX28DRAFT_0660at 654.843 kb on - strand, within EX28DRAFT_0660at 654.992 kb on + strand, within EX28DRAFT_0660at 655.192 kb on + strand, within EX28DRAFT_0661at 655.275 kb on - strand, within EX28DRAFT_0661at 655.604 kb on + strand, within EX28DRAFT_0661at 655.774 kb on - strand, within EX28DRAFT_0661at 655.881 kb on + strand, within EX28DRAFT_0661at 656.037 kb on - strandat 656.171 kb on + strandat 656.173 kb on + strandat 656.174 kb on - strandat 656.174 kb on - strandat 656.202 kb on - strandat 656.202 kb on - strandat 656.228 kb on - strandat 656.286 kb on - strand, within EX28DRAFT_0662at 656.286 kb on - strand, within EX28DRAFT_0662at 656.312 kb on + strand, within EX28DRAFT_0662at 656.313 kb on - strand, within EX28DRAFT_0662at 656.314 kb on + strand, within EX28DRAFT_0662at 656.315 kb on + strand, within EX28DRAFT_0662at 656.339 kb on + strand, within EX28DRAFT_0662at 656.340 kb on - strand, within EX28DRAFT_0662at 656.376 kb on + strand, within EX28DRAFT_0662at 656.377 kb on - strand, within EX28DRAFT_0662at 656.594 kb on - strand, within EX28DRAFT_0662

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Per-strain Table

Position Strand Gene LocusTag Fraction M9 with casaminos and trichloroethylene 76.3 uM
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654,123 + +0.0
654,123 + -1.4
654,182 + -0.1
654,213 - -0.4
654,213 - +1.1
654,218 - +0.3
654,220 + +0.3
654,220 + -0.6
654,220 + +0.1
654,221 - -0.1
654,221 - +0.1
654,232 + +0.6
654,232 + +0.2
654,258 + -0.5
654,291 + -0.3
654,292 - -0.9
654,292 - -1.5
654,308 + EX28DRAFT_0660 0.11 +0.2
654,309 - EX28DRAFT_0660 0.11 +1.1
654,309 - EX28DRAFT_0660 0.11 -0.0
654,311 + EX28DRAFT_0660 0.12 -0.3
654,342 - EX28DRAFT_0660 0.15 +0.3
654,359 + EX28DRAFT_0660 0.17 +0.6
654,360 - EX28DRAFT_0660 0.17 -0.3
654,414 + EX28DRAFT_0660 0.23 +0.1
654,414 + EX28DRAFT_0660 0.23 -0.3
654,425 + EX28DRAFT_0660 0.25 +0.8
654,426 - EX28DRAFT_0660 0.25 +0.5
654,426 - EX28DRAFT_0660 0.25 +0.4
654,426 - EX28DRAFT_0660 0.25 +0.1
654,426 - EX28DRAFT_0660 0.25 -0.3
654,426 - EX28DRAFT_0660 0.25 +0.5
654,429 + EX28DRAFT_0660 0.25 -1.0
654,429 + EX28DRAFT_0660 0.25 -1.2
654,429 + EX28DRAFT_0660 0.25 -0.5
654,429 + EX28DRAFT_0660 0.25 -0.9
654,430 - EX28DRAFT_0660 0.25 +1.1
654,430 - EX28DRAFT_0660 0.25 +0.2
654,430 - EX28DRAFT_0660 0.25 +0.3
654,430 - EX28DRAFT_0660 0.25 -0.1
654,431 + EX28DRAFT_0660 0.25 +1.4
654,431 + EX28DRAFT_0660 0.25 -0.9
654,432 - EX28DRAFT_0660 0.25 -0.6
654,432 - EX28DRAFT_0660 0.25 +0.2
654,432 - EX28DRAFT_0660 0.25 -0.0
654,432 - EX28DRAFT_0660 0.25 +0.6
654,510 + EX28DRAFT_0660 0.34 +0.1
654,544 - EX28DRAFT_0660 0.38 -0.0
654,623 + EX28DRAFT_0660 0.47 -0.6
654,624 - EX28DRAFT_0660 0.47 -0.0
654,624 - EX28DRAFT_0660 0.47 -0.2
654,843 - EX28DRAFT_0660 0.72 -0.4
654,992 + EX28DRAFT_0660 0.88 -0.2
655,192 + EX28DRAFT_0661 0.11 +1.0
655,275 - EX28DRAFT_0661 0.20 +0.3
655,604 + EX28DRAFT_0661 0.55 -0.4
655,774 - EX28DRAFT_0661 0.73 -0.2
655,881 + EX28DRAFT_0661 0.85 +0.2
656,037 - -0.8
656,171 + -0.1
656,173 + +0.1
656,174 - +0.0
656,174 - +0.0
656,202 - -0.4
656,202 - -0.1
656,228 - -0.2
656,286 - EX28DRAFT_0662 0.13 +0.5
656,286 - EX28DRAFT_0662 0.13 -2.8
656,312 + EX28DRAFT_0662 0.14 -0.4
656,313 - EX28DRAFT_0662 0.14 -0.2
656,314 + EX28DRAFT_0662 0.14 -1.4
656,315 + EX28DRAFT_0662 0.14 -0.9
656,339 + EX28DRAFT_0662 0.15 +0.2
656,340 - EX28DRAFT_0662 0.15 +0.3
656,376 + EX28DRAFT_0662 0.17 -0.3
656,377 - EX28DRAFT_0662 0.17 -0.7
656,594 - EX28DRAFT_0662 0.28 +0.1

Or see this region's nucleotide sequence