Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00866 and CCNA_00867 are separated by 186 nucleotides CCNA_00867 and CCNA_03889 are separated by 254 nucleotides CCNA_03889 and CCNA_00869 are separated by 157 nucleotides
CCNA_00866: CCNA_00866 - fumarylacetoacetate hydrolase family protein, at 944,663 to 945,817
_00866
CCNA_00867: CCNA_00867 - hypothetical protein, at 946,004 to 946,492
_00867
CCNA_03889: CCNA_03889 - hypothetical protein, at 946,747 to 947,268
_03889
CCNA_00869: CCNA_00869 - DNA modification methyltransferase-related protein, at 947,426 to 950,383
_00869
Position (kb) 946
947
948 Strain fitness (log2 ratio) -2
-1
0
1
2 at 945.918 kb on - strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.921 kb on + strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.929 kb on - strand at 945.963 kb on + strand at 945.993 kb on + strand at 945.993 kb on + strand at 945.996 kb on - strand at 946.057 kb on + strand, within CCNA_00867 at 946.057 kb on + strand, within CCNA_00867 at 946.057 kb on + strand, within CCNA_00867 at 946.115 kb on - strand, within CCNA_00867 at 946.134 kb on - strand, within CCNA_00867 at 946.143 kb on + strand, within CCNA_00867 at 946.151 kb on - strand, within CCNA_00867 at 946.172 kb on + strand, within CCNA_00867 at 946.190 kb on + strand, within CCNA_00867 at 946.190 kb on + strand, within CCNA_00867 at 946.200 kb on + strand, within CCNA_00867 at 946.232 kb on + strand, within CCNA_00867 at 946.244 kb on + strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.245 kb on - strand, within CCNA_00867 at 946.312 kb on - strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.324 kb on + strand, within CCNA_00867 at 946.352 kb on + strand, within CCNA_00867 at 946.376 kb on + strand, within CCNA_00867 at 946.376 kb on + strand, within CCNA_00867 at 946.376 kb on + strand, within CCNA_00867 at 946.381 kb on + strand, within CCNA_00867 at 946.384 kb on - strand, within CCNA_00867 at 946.413 kb on - strand, within CCNA_00867 at 946.415 kb on + strand, within CCNA_00867 at 946.425 kb on + strand, within CCNA_00867 at 946.430 kb on + strand, within CCNA_00867 at 946.487 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.509 kb on + strand at 946.540 kb on + strand at 946.548 kb on - strand at 946.548 kb on - strand at 946.589 kb on + strand at 946.645 kb on + strand at 946.656 kb on + strand at 946.664 kb on - strand at 946.664 kb on - strand at 946.664 kb on - strand at 946.664 kb on - strand at 946.665 kb on - strand at 946.711 kb on - strand at 946.769 kb on - strand at 946.797 kb on - strand at 946.813 kb on - strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.815 kb on + strand, within CCNA_03889 at 946.869 kb on + strand, within CCNA_03889 at 946.907 kb on + strand, within CCNA_03889 at 946.907 kb on + strand, within CCNA_03889 at 946.917 kb on + strand, within CCNA_03889 at 946.917 kb on + strand, within CCNA_03889 at 946.917 kb on + strand, within CCNA_03889 at 946.917 kb on + strand, within CCNA_03889 at 946.917 kb on + strand, within CCNA_03889 at 946.925 kb on - strand, within CCNA_03889 at 946.925 kb on - strand, within CCNA_03889 at 946.925 kb on - strand, within CCNA_03889 at 946.925 kb on - strand, within CCNA_03889 at 946.952 kb on + strand, within CCNA_03889 at 946.952 kb on - strand, within CCNA_03889 at 946.963 kb on + strand, within CCNA_03889 at 946.971 kb on - strand, within CCNA_03889 at 946.978 kb on + strand, within CCNA_03889 at 946.986 kb on - strand, within CCNA_03889 at 946.999 kb on - strand, within CCNA_03889 at 947.004 kb on - strand, within CCNA_03889 at 947.009 kb on - strand, within CCNA_03889 at 947.017 kb on + strand, within CCNA_03889 at 947.029 kb on + strand, within CCNA_03889 at 947.031 kb on + strand, within CCNA_03889 at 947.037 kb on - strand, within CCNA_03889 at 947.037 kb on - strand, within CCNA_03889 at 947.037 kb on - strand, within CCNA_03889 at 947.062 kb on - strand, within CCNA_03889 at 947.088 kb on + strand, within CCNA_03889 at 947.101 kb on + strand, within CCNA_03889 at 947.115 kb on - strand, within CCNA_03889 at 947.115 kb on - strand, within CCNA_03889 at 947.172 kb on - strand, within CCNA_03889 at 947.172 kb on - strand, within CCNA_03889 at 947.203 kb on + strand, within CCNA_03889 at 947.237 kb on + strand at 947.237 kb on + strand at 947.247 kb on + strand at 947.255 kb on - strand at 947.257 kb on + strand at 947.262 kb on + strand at 947.262 kb on + strand at 947.262 kb on + strand at 947.269 kb on + strand at 947.270 kb on - strand at 947.270 kb on - strand at 947.270 kb on - strand at 947.314 kb on - strand at 947.355 kb on + strand at 947.356 kb on + strand at 947.399 kb on - strand at 947.409 kb on - strand at 947.414 kb on - strand at 947.417 kb on + strand at 947.418 kb on + strand at 947.418 kb on + strand at 947.419 kb on + strand at 947.426 kb on - strand at 947.426 kb on - strand at 947.426 kb on - strand at 947.426 kb on - strand at 947.426 kb on - strand at 947.427 kb on - strand at 947.515 kb on - strand at 947.542 kb on + strand at 947.547 kb on + strand at 947.551 kb on + strand at 947.555 kb on - strand at 947.559 kb on - strand at 947.617 kb on + strand at 947.617 kb on + strand at 947.625 kb on - strand at 947.641 kb on + strand at 947.739 kb on + strand, within CCNA_00869 at 947.739 kb on + strand, within CCNA_00869 at 947.818 kb on + strand, within CCNA_00869 at 947.838 kb on + strand, within CCNA_00869 at 947.846 kb on - strand, within CCNA_00869 at 947.885 kb on + strand, within CCNA_00869 at 947.893 kb on - strand, within CCNA_00869 at 947.893 kb on - strand, within CCNA_00869 at 947.948 kb on + strand, within CCNA_00869 at 948.035 kb on + strand, within CCNA_00869 at 948.061 kb on + strand, within CCNA_00869 at 948.087 kb on + strand, within CCNA_00869 at 948.143 kb on + strand, within CCNA_00869 at 948.231 kb on - strand, within CCNA_00869 at 948.252 kb on + strand, within CCNA_00869
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 945,918 - -0.8 945,921 + +0.6 945,921 + -1.5 945,921 + -0.6 945,921 + -0.9 945,921 + -0.5 945,921 + -0.3 945,921 + -1.0 945,929 - -1.1 945,929 - -0.5 945,929 - -1.8 945,929 - -1.1 945,929 - -1.5 945,929 - +0.2 945,929 - +1.5 945,963 + +1.5 945,993 + +0.3 945,993 + -1.4 945,996 - -0.7 946,057 + CCNA_00867 0.11 +0.7 946,057 + CCNA_00867 0.11 +0.8 946,057 + CCNA_00867 0.11 -0.2 946,115 - CCNA_00867 0.23 -0.2 946,134 - CCNA_00867 0.27 -0.1 946,143 + CCNA_00867 0.28 -0.3 946,151 - CCNA_00867 0.30 -0.3 946,172 + CCNA_00867 0.34 +1.4 946,190 + CCNA_00867 0.38 -0.4 946,190 + CCNA_00867 0.38 +1.3 946,200 + CCNA_00867 0.40 +0.9 946,232 + CCNA_00867 0.47 -0.1 946,244 + CCNA_00867 0.49 +0.8 946,245 - CCNA_00867 0.49 -0.2 946,245 - CCNA_00867 0.49 +0.2 946,245 - CCNA_00867 0.49 +0.2 946,245 - CCNA_00867 0.49 -0.1 946,312 - CCNA_00867 0.63 -0.6 946,324 + CCNA_00867 0.65 +0.6 946,324 + CCNA_00867 0.65 +0.4 946,324 + CCNA_00867 0.65 -0.8 946,324 + CCNA_00867 0.65 +0.3 946,352 + CCNA_00867 0.71 +0.0 946,376 + CCNA_00867 0.76 -0.0 946,376 + CCNA_00867 0.76 -1.5 946,376 + CCNA_00867 0.76 +0.4 946,381 + CCNA_00867 0.77 +0.2 946,384 - CCNA_00867 0.78 -0.3 946,413 - CCNA_00867 0.84 +0.7 946,415 + CCNA_00867 0.84 -2.2 946,425 + CCNA_00867 0.86 -1.7 946,430 + CCNA_00867 0.87 +0.1 946,487 + -0.7 946,509 + +0.4 946,509 + +0.3 946,509 + -1.5 946,540 + +0.7 946,548 - -0.4 946,548 - -0.5 946,589 + +0.3 946,645 + -0.1 946,656 + -0.2 946,664 - -0.6 946,664 - +0.0 946,664 - +0.4 946,664 - -0.1 946,665 - +0.5 946,711 - -0.3 946,769 - +0.1 946,797 - -0.2 946,813 - CCNA_03889 0.13 +0.4 946,815 + CCNA_03889 0.13 +0.5 946,815 + CCNA_03889 0.13 -0.5 946,869 + CCNA_03889 0.23 +1.5 946,907 + CCNA_03889 0.31 -0.6 946,907 + CCNA_03889 0.31 -0.8 946,917 + CCNA_03889 0.33 +0.7 946,917 + CCNA_03889 0.33 +0.7 946,917 + CCNA_03889 0.33 -2.1 946,917 + CCNA_03889 0.33 -0.0 946,917 + CCNA_03889 0.33 -0.1 946,925 - CCNA_03889 0.34 +0.8 946,925 - CCNA_03889 0.34 -0.2 946,925 - CCNA_03889 0.34 -0.3 946,925 - CCNA_03889 0.34 +0.6 946,952 + CCNA_03889 0.39 -1.5 946,952 - CCNA_03889 0.39 -0.2 946,963 + CCNA_03889 0.41 +0.1 946,971 - CCNA_03889 0.43 +0.7 946,978 + CCNA_03889 0.44 +0.8 946,986 - CCNA_03889 0.46 -1.0 946,999 - CCNA_03889 0.48 +0.5 947,004 - CCNA_03889 0.49 +0.3 947,009 - CCNA_03889 0.50 -0.2 947,017 + CCNA_03889 0.52 +0.4 947,029 + CCNA_03889 0.54 -0.4 947,031 + CCNA_03889 0.54 +0.8 947,037 - CCNA_03889 0.56 +0.6 947,037 - CCNA_03889 0.56 +0.6 947,037 - CCNA_03889 0.56 -0.5 947,062 - CCNA_03889 0.60 +0.2 947,088 + CCNA_03889 0.65 -0.4 947,101 + CCNA_03889 0.68 +0.3 947,115 - CCNA_03889 0.70 +0.0 947,115 - CCNA_03889 0.70 +0.1 947,172 - CCNA_03889 0.81 +0.2 947,172 - CCNA_03889 0.81 +0.8 947,203 + CCNA_03889 0.87 -0.3 947,237 + -0.5 947,237 + +0.2 947,247 + -0.1 947,255 - +0.2 947,257 + +0.1 947,262 + +0.2 947,262 + -0.0 947,262 + -0.6 947,269 + +0.0 947,270 - -0.0 947,270 - +0.0 947,270 - -0.4 947,314 - +0.2 947,355 + -0.3 947,356 + -0.3 947,399 - +1.0 947,409 - +0.5 947,414 - +0.6 947,417 + -0.2 947,418 + -0.5 947,418 + +0.8 947,419 + -0.8 947,426 - -0.1 947,426 - +0.0 947,426 - -0.6 947,426 - +0.2 947,426 - +0.4 947,427 - -1.9 947,515 - +0.2 947,542 + -1.1 947,547 + +2.2 947,551 + +0.2 947,555 - +0.7 947,559 - +0.3 947,617 + -0.2 947,617 + +1.4 947,625 - +0.4 947,641 + +0.0 947,739 + CCNA_00869 0.11 -0.8 947,739 + CCNA_00869 0.11 +0.3 947,818 + CCNA_00869 0.13 -0.2 947,838 + CCNA_00869 0.14 +1.4 947,846 - CCNA_00869 0.14 +0.1 947,885 + CCNA_00869 0.16 +0.5 947,893 - CCNA_00869 0.16 +1.9 947,893 - CCNA_00869 0.16 +0.6 947,948 + CCNA_00869 0.18 -0.7 948,035 + CCNA_00869 0.21 -1.5 948,061 + CCNA_00869 0.21 -1.1 948,087 + CCNA_00869 0.22 -0.6 948,143 + CCNA_00869 0.24 -1.0 948,231 - CCNA_00869 0.27 +1.2 948,252 + CCNA_00869 0.28 -0.1
Or see this region's nucleotide sequence