Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03280 and CCNA_03281 are separated by 142 nucleotides CCNA_03281 and CCNA_03282 are separated by 218 nucleotides CCNA_03282 and CCNA_03283 are separated by 33 nucleotides
CCNA_03280: CCNA_03280 - pyruvate ferredoxin/flavodoxin oxidoreductase family protein, at 3,447,503 to 3,450,943
_03280
CCNA_03281: CCNA_03281 - AsnC-family transcriptional regulator, at 3,451,086 to 3,451,583
_03281
CCNA_03282: CCNA_03282 - pirin, at 3,451,802 to 3,452,668
_03282
CCNA_03283: CCNA_03283 - TIM-barrel metal-dependent hydrolase, at 3,452,702 to 3,453,721
_03283
Position (kb)
3451
3452
3453 Strain fitness (log2 ratio)
-2
-1
0
1 at 3450.839 kb on + strand at 3450.969 kb on + strand at 3450.981 kb on + strand at 3450.988 kb on - strand at 3451.056 kb on + strand at 3451.209 kb on - strand, within CCNA_03281 at 3451.236 kb on + strand, within CCNA_03281 at 3451.292 kb on + strand, within CCNA_03281 at 3451.292 kb on + strand, within CCNA_03281 at 3451.292 kb on + strand, within CCNA_03281 at 3451.300 kb on + strand, within CCNA_03281 at 3451.347 kb on - strand, within CCNA_03281 at 3451.381 kb on + strand, within CCNA_03281 at 3451.441 kb on + strand, within CCNA_03281 at 3451.494 kb on + strand, within CCNA_03281 at 3451.529 kb on + strand, within CCNA_03281 at 3451.529 kb on + strand, within CCNA_03281 at 3451.537 kb on - strand at 3451.558 kb on + strand at 3451.591 kb on + strand at 3451.613 kb on + strand at 3451.620 kb on - strand at 3451.639 kb on - strand at 3451.639 kb on - strand at 3451.689 kb on + strand at 3451.692 kb on - strand at 3451.692 kb on - strand at 3451.692 kb on - strand at 3451.731 kb on - strand at 3451.750 kb on + strand at 3451.760 kb on - strand at 3451.762 kb on - strand at 3451.771 kb on + strand at 3451.812 kb on - strand at 3451.835 kb on + strand at 3451.870 kb on + strand at 3451.873 kb on - strand at 3451.890 kb on - strand, within CCNA_03282 at 3451.953 kb on - strand, within CCNA_03282 at 3452.013 kb on - strand, within CCNA_03282 at 3452.013 kb on - strand, within CCNA_03282 at 3452.076 kb on - strand, within CCNA_03282 at 3452.111 kb on - strand, within CCNA_03282 at 3452.121 kb on - strand, within CCNA_03282 at 3452.121 kb on - strand, within CCNA_03282 at 3452.123 kb on - strand, within CCNA_03282 at 3452.158 kb on + strand, within CCNA_03282 at 3452.158 kb on + strand, within CCNA_03282 at 3452.158 kb on + strand, within CCNA_03282 at 3452.158 kb on + strand, within CCNA_03282 at 3452.158 kb on + strand, within CCNA_03282 at 3452.166 kb on - strand, within CCNA_03282 at 3452.189 kb on - strand, within CCNA_03282 at 3452.189 kb on - strand, within CCNA_03282 at 3452.190 kb on - strand, within CCNA_03282 at 3452.223 kb on + strand, within CCNA_03282 at 3452.233 kb on + strand, within CCNA_03282 at 3452.246 kb on - strand, within CCNA_03282 at 3452.261 kb on - strand, within CCNA_03282 at 3452.261 kb on - strand, within CCNA_03282 at 3452.272 kb on - strand, within CCNA_03282 at 3452.294 kb on + strand, within CCNA_03282 at 3452.321 kb on - strand, within CCNA_03282 at 3452.380 kb on - strand, within CCNA_03282 at 3452.382 kb on - strand, within CCNA_03282 at 3452.389 kb on - strand, within CCNA_03282 at 3452.444 kb on + strand, within CCNA_03282 at 3452.444 kb on + strand, within CCNA_03282 at 3452.444 kb on + strand, within CCNA_03282 at 3452.482 kb on + strand, within CCNA_03282 at 3452.482 kb on + strand, within CCNA_03282 at 3452.482 kb on + strand, within CCNA_03282 at 3452.482 kb on + strand, within CCNA_03282 at 3452.488 kb on - strand, within CCNA_03282 at 3452.490 kb on - strand, within CCNA_03282 at 3452.490 kb on - strand, within CCNA_03282 at 3452.563 kb on - strand, within CCNA_03282 at 3452.576 kb on - strand, within CCNA_03282 at 3452.588 kb on - strand at 3452.590 kb on + strand at 3452.590 kb on + strand at 3452.590 kb on + strand at 3452.590 kb on + strand at 3452.590 kb on + strand at 3452.590 kb on + strand at 3452.590 kb on + strand at 3452.590 kb on + strand at 3452.590 kb on + strand at 3452.598 kb on - strand at 3452.598 kb on - strand at 3452.598 kb on - strand at 3452.598 kb on - strand at 3452.598 kb on - strand at 3452.598 kb on - strand at 3452.598 kb on - strand at 3452.598 kb on - strand at 3452.598 kb on - strand at 3452.598 kb on - strand at 3452.598 kb on - strand at 3452.598 kb on - strand at 3452.616 kb on + strand at 3452.631 kb on + strand at 3452.639 kb on - strand at 3452.639 kb on - strand at 3452.654 kb on - strand at 3452.655 kb on - strand at 3452.671 kb on - strand at 3452.690 kb on + strand at 3452.724 kb on - strand at 3452.725 kb on + strand at 3452.736 kb on + strand at 3452.770 kb on - strand at 3452.770 kb on - strand at 3452.801 kb on - strand at 3452.839 kb on + strand, within CCNA_03283 at 3452.844 kb on + strand, within CCNA_03283 at 3452.852 kb on - strand, within CCNA_03283 at 3452.852 kb on - strand, within CCNA_03283 at 3452.896 kb on + strand, within CCNA_03283 at 3452.911 kb on - strand, within CCNA_03283 at 3452.913 kb on - strand, within CCNA_03283 at 3452.926 kb on - strand, within CCNA_03283 at 3452.943 kb on - strand, within CCNA_03283 at 3452.960 kb on + strand, within CCNA_03283 at 3452.964 kb on + strand, within CCNA_03283 at 3452.964 kb on + strand, within CCNA_03283 at 3452.968 kb on - strand, within CCNA_03283 at 3452.972 kb on - strand, within CCNA_03283 at 3452.972 kb on - strand, within CCNA_03283 at 3452.972 kb on - strand, within CCNA_03283 at 3452.982 kb on + strand, within CCNA_03283 at 3452.982 kb on + strand, within CCNA_03283 at 3452.982 kb on + strand, within CCNA_03283 at 3452.982 kb on + strand, within CCNA_03283 at 3452.982 kb on + strand, within CCNA_03283 at 3452.990 kb on - strand, within CCNA_03283 at 3452.990 kb on - strand, within CCNA_03283 at 3452.990 kb on - strand, within CCNA_03283 at 3452.990 kb on - strand, within CCNA_03283 at 3452.990 kb on - strand, within CCNA_03283 at 3452.990 kb on - strand, within CCNA_03283 at 3452.990 kb on - strand, within CCNA_03283 at 3452.992 kb on + strand, within CCNA_03283 at 3452.992 kb on + strand, within CCNA_03283 at 3453.000 kb on - strand, within CCNA_03283 at 3453.000 kb on - strand, within CCNA_03283 at 3453.008 kb on - strand, within CCNA_03283 at 3453.008 kb on - strand, within CCNA_03283 at 3453.008 kb on - strand, within CCNA_03283 at 3453.024 kb on + strand, within CCNA_03283 at 3453.041 kb on - strand, within CCNA_03283 at 3453.137 kb on - strand, within CCNA_03283 at 3453.187 kb on - strand, within CCNA_03283 at 3453.197 kb on - strand, within CCNA_03283 at 3453.231 kb on - strand, within CCNA_03283 at 3453.267 kb on - strand, within CCNA_03283 at 3453.276 kb on + strand, within CCNA_03283 at 3453.276 kb on + strand, within CCNA_03283 at 3453.284 kb on - strand, within CCNA_03283 at 3453.312 kb on + strand, within CCNA_03283 at 3453.312 kb on + strand, within CCNA_03283 at 3453.314 kb on - strand, within CCNA_03283 at 3453.322 kb on + strand, within CCNA_03283 at 3453.350 kb on - strand, within CCNA_03283 at 3453.373 kb on - strand, within CCNA_03283 at 3453.381 kb on + strand, within CCNA_03283 at 3453.381 kb on + strand, within CCNA_03283 at 3453.392 kb on + strand, within CCNA_03283 at 3453.392 kb on + strand, within CCNA_03283 at 3453.398 kb on - strand, within CCNA_03283 at 3453.400 kb on - strand, within CCNA_03283 at 3453.402 kb on + strand, within CCNA_03283 at 3453.433 kb on - strand, within CCNA_03283 at 3453.440 kb on + strand, within CCNA_03283 at 3453.440 kb on + strand, within CCNA_03283 at 3453.448 kb on - strand, within CCNA_03283 at 3453.485 kb on + strand, within CCNA_03283 at 3453.515 kb on - strand, within CCNA_03283 at 3453.526 kb on + strand, within CCNA_03283 at 3453.533 kb on + strand, within CCNA_03283 at 3453.567 kb on + strand, within CCNA_03283 at 3453.582 kb on + strand, within CCNA_03283 at 3453.582 kb on + strand, within CCNA_03283 at 3453.582 kb on + strand, within CCNA_03283
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 3,450,839 + -0.3 3,450,969 + -1.9 3,450,981 + -0.6 3,450,988 - +0.2 3,451,056 + +0.0 3,451,209 - CCNA_03281 0.25 +0.5 3,451,236 + CCNA_03281 0.30 -0.0 3,451,292 + CCNA_03281 0.41 +0.3 3,451,292 + CCNA_03281 0.41 +0.7 3,451,292 + CCNA_03281 0.41 -0.1 3,451,300 + CCNA_03281 0.43 +1.0 3,451,347 - CCNA_03281 0.52 +0.5 3,451,381 + CCNA_03281 0.59 -0.0 3,451,441 + CCNA_03281 0.71 -0.4 3,451,494 + CCNA_03281 0.82 -0.3 3,451,529 + CCNA_03281 0.89 -0.4 3,451,529 + CCNA_03281 0.89 +0.8 3,451,537 - -0.1 3,451,558 + +0.1 3,451,591 + -0.2 3,451,613 + -0.1 3,451,620 - -0.6 3,451,639 - -0.5 3,451,639 - -0.4 3,451,689 + +0.4 3,451,692 - +0.9 3,451,692 - +0.2 3,451,692 - -0.0 3,451,731 - +0.1 3,451,750 + -0.1 3,451,760 - +0.1 3,451,762 - -0.5 3,451,771 + -0.5 3,451,812 - -0.7 3,451,835 + -0.2 3,451,870 + -0.0 3,451,873 - -0.9 3,451,890 - CCNA_03282 0.10 +0.4 3,451,953 - CCNA_03282 0.17 -0.6 3,452,013 - CCNA_03282 0.24 +0.5 3,452,013 - CCNA_03282 0.24 -0.4 3,452,076 - CCNA_03282 0.32 -0.1 3,452,111 - CCNA_03282 0.36 -0.0 3,452,121 - CCNA_03282 0.37 +0.1 3,452,121 - CCNA_03282 0.37 -0.4 3,452,123 - CCNA_03282 0.37 -0.4 3,452,158 + CCNA_03282 0.41 +1.2 3,452,158 + CCNA_03282 0.41 -0.3 3,452,158 + CCNA_03282 0.41 +0.1 3,452,158 + CCNA_03282 0.41 +0.2 3,452,158 + CCNA_03282 0.41 -0.1 3,452,166 - CCNA_03282 0.42 -0.5 3,452,189 - CCNA_03282 0.45 +0.2 3,452,189 - CCNA_03282 0.45 +0.9 3,452,190 - CCNA_03282 0.45 +0.6 3,452,223 + CCNA_03282 0.49 -0.2 3,452,233 + CCNA_03282 0.50 +0.2 3,452,246 - CCNA_03282 0.51 -0.2 3,452,261 - CCNA_03282 0.53 +0.5 3,452,261 - CCNA_03282 0.53 -1.2 3,452,272 - CCNA_03282 0.54 -0.2 3,452,294 + CCNA_03282 0.57 +1.0 3,452,321 - CCNA_03282 0.60 +0.1 3,452,380 - CCNA_03282 0.67 +0.1 3,452,382 - CCNA_03282 0.67 +0.1 3,452,389 - CCNA_03282 0.68 +0.1 3,452,444 + CCNA_03282 0.74 -0.2 3,452,444 + CCNA_03282 0.74 -1.6 3,452,444 + CCNA_03282 0.74 -0.3 3,452,482 + CCNA_03282 0.78 -0.2 3,452,482 + CCNA_03282 0.78 +0.0 3,452,482 + CCNA_03282 0.78 -0.1 3,452,482 + CCNA_03282 0.78 -0.8 3,452,488 - CCNA_03282 0.79 -0.2 3,452,490 - CCNA_03282 0.79 -0.2 3,452,490 - CCNA_03282 0.79 -0.6 3,452,563 - CCNA_03282 0.88 -0.9 3,452,576 - CCNA_03282 0.89 +0.0 3,452,588 - +0.1 3,452,590 + +0.3 3,452,590 + -0.4 3,452,590 + +0.3 3,452,590 + +0.1 3,452,590 + -0.5 3,452,590 + -0.6 3,452,590 + +0.8 3,452,590 + -0.6 3,452,590 + -0.1 3,452,598 - +1.4 3,452,598 - -0.4 3,452,598 - -0.8 3,452,598 - -1.0 3,452,598 - +0.1 3,452,598 - +0.4 3,452,598 - +0.0 3,452,598 - -0.4 3,452,598 - +0.4 3,452,598 - -1.1 3,452,598 - -0.3 3,452,598 - -1.8 3,452,616 + -0.5 3,452,631 + +0.2 3,452,639 - -0.6 3,452,639 - -0.8 3,452,654 - +0.2 3,452,655 - +0.8 3,452,671 - -0.6 3,452,690 + +0.7 3,452,724 - -1.1 3,452,725 + -0.2 3,452,736 + -0.5 3,452,770 - -0.2 3,452,770 - +0.4 3,452,801 - +0.2 3,452,839 + CCNA_03283 0.13 -0.9 3,452,844 + CCNA_03283 0.14 -0.4 3,452,852 - CCNA_03283 0.15 -0.3 3,452,852 - CCNA_03283 0.15 -0.3 3,452,896 + CCNA_03283 0.19 -0.3 3,452,911 - CCNA_03283 0.20 -0.1 3,452,913 - CCNA_03283 0.21 -0.4 3,452,926 - CCNA_03283 0.22 +1.5 3,452,943 - CCNA_03283 0.24 -0.3 3,452,960 + CCNA_03283 0.25 +0.2 3,452,964 + CCNA_03283 0.26 +0.1 3,452,964 + CCNA_03283 0.26 +1.5 3,452,968 - CCNA_03283 0.26 -1.4 3,452,972 - CCNA_03283 0.26 +0.9 3,452,972 - CCNA_03283 0.26 -0.0 3,452,972 - CCNA_03283 0.26 +1.5 3,452,982 + CCNA_03283 0.27 -1.3 3,452,982 + CCNA_03283 0.27 +0.6 3,452,982 + CCNA_03283 0.27 -0.0 3,452,982 + CCNA_03283 0.27 -0.0 3,452,982 + CCNA_03283 0.27 -0.2 3,452,990 - CCNA_03283 0.28 -0.3 3,452,990 - CCNA_03283 0.28 -0.9 3,452,990 - CCNA_03283 0.28 -0.2 3,452,990 - CCNA_03283 0.28 +0.3 3,452,990 - CCNA_03283 0.28 -0.3 3,452,990 - CCNA_03283 0.28 +0.3 3,452,990 - CCNA_03283 0.28 +0.2 3,452,992 + CCNA_03283 0.28 -0.4 3,452,992 + CCNA_03283 0.28 -1.0 3,453,000 - CCNA_03283 0.29 +0.5 3,453,000 - CCNA_03283 0.29 -0.8 3,453,008 - CCNA_03283 0.30 +0.4 3,453,008 - CCNA_03283 0.30 +0.1 3,453,008 - CCNA_03283 0.30 -1.1 3,453,024 + CCNA_03283 0.32 -0.5 3,453,041 - CCNA_03283 0.33 -0.7 3,453,137 - CCNA_03283 0.43 -1.1 3,453,187 - CCNA_03283 0.48 +0.2 3,453,197 - CCNA_03283 0.49 +0.2 3,453,231 - CCNA_03283 0.52 +0.7 3,453,267 - CCNA_03283 0.55 +0.5 3,453,276 + CCNA_03283 0.56 -0.4 3,453,276 + CCNA_03283 0.56 +0.1 3,453,284 - CCNA_03283 0.57 -0.8 3,453,312 + CCNA_03283 0.60 -0.2 3,453,312 + CCNA_03283 0.60 -0.9 3,453,314 - CCNA_03283 0.60 -0.9 3,453,322 + CCNA_03283 0.61 +0.8 3,453,350 - CCNA_03283 0.64 -0.1 3,453,373 - CCNA_03283 0.66 +0.4 3,453,381 + CCNA_03283 0.67 -0.1 3,453,381 + CCNA_03283 0.67 +0.1 3,453,392 + CCNA_03283 0.68 +0.5 3,453,392 + CCNA_03283 0.68 +0.3 3,453,398 - CCNA_03283 0.68 +0.0 3,453,400 - CCNA_03283 0.68 -0.2 3,453,402 + CCNA_03283 0.69 -0.2 3,453,433 - CCNA_03283 0.72 -0.5 3,453,440 + CCNA_03283 0.72 -1.0 3,453,440 + CCNA_03283 0.72 +0.0 3,453,448 - CCNA_03283 0.73 -0.8 3,453,485 + CCNA_03283 0.77 +0.6 3,453,515 - CCNA_03283 0.80 -0.1 3,453,526 + CCNA_03283 0.81 -0.6 3,453,533 + CCNA_03283 0.81 +0.1 3,453,567 + CCNA_03283 0.85 +0.2 3,453,582 + CCNA_03283 0.86 -0.0 3,453,582 + CCNA_03283 0.86 -0.2 3,453,582 + CCNA_03283 0.86 +1.3
Or see this region's nucleotide sequence