Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_03022

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03020 and CCNA_03021 are separated by 9 nucleotidesCCNA_03021 and CCNA_03022 overlap by 31 nucleotidesCCNA_03022 and CCNA_03023 overlap by 91 nucleotides CCNA_03020: CCNA_03020 - phosphatidylinositol-specific phospholipase C1-like protein, at 3,174,508 to 3,175,635 _03020 CCNA_03021: CCNA_03021 - hypothetical protein, at 3,175,645 to 3,175,857 _03021 CCNA_03022: CCNA_03022 - PiuB-family transmembrane transporter, at 3,175,827 to 3,177,011 _03022 CCNA_03023: CCNA_03023 - TonB-dependent receptor, at 3,176,921 to 3,179,086 _03023 Position (kb) 3175 3176 3177 3178Strain fitness (log2 ratio) -3 -2 -1 0 1at 3174.831 kb on + strand, within CCNA_03020at 3174.838 kb on + strand, within CCNA_03020at 3174.868 kb on + strand, within CCNA_03020at 3174.873 kb on + strand, within CCNA_03020at 3174.876 kb on - strand, within CCNA_03020at 3174.881 kb on - strand, within CCNA_03020at 3174.881 kb on - strand, within CCNA_03020at 3174.881 kb on - strand, within CCNA_03020at 3174.902 kb on + strand, within CCNA_03020at 3174.979 kb on + strand, within CCNA_03020at 3174.986 kb on + strand, within CCNA_03020at 3175.054 kb on + strand, within CCNA_03020at 3175.054 kb on + strand, within CCNA_03020at 3175.054 kb on + strand, within CCNA_03020at 3175.059 kb on + strand, within CCNA_03020at 3175.062 kb on - strand, within CCNA_03020at 3175.077 kb on + strand, within CCNA_03020at 3175.080 kb on - strand, within CCNA_03020at 3175.084 kb on + strand, within CCNA_03020at 3175.108 kb on + strand, within CCNA_03020at 3175.149 kb on + strand, within CCNA_03020at 3175.152 kb on - strand, within CCNA_03020at 3175.155 kb on + strand, within CCNA_03020at 3175.155 kb on + strand, within CCNA_03020at 3175.155 kb on + strand, within CCNA_03020at 3175.155 kb on + strand, within CCNA_03020at 3175.157 kb on - strand, within CCNA_03020at 3175.163 kb on - strand, within CCNA_03020at 3175.163 kb on - strand, within CCNA_03020at 3175.163 kb on - strand, within CCNA_03020at 3175.163 kb on - strand, within CCNA_03020at 3175.163 kb on - strand, within CCNA_03020at 3175.163 kb on - strand, within CCNA_03020at 3175.163 kb on - strand, within CCNA_03020at 3175.163 kb on - strand, within CCNA_03020at 3175.163 kb on - strand, within CCNA_03020at 3175.170 kb on - strand, within CCNA_03020at 3175.177 kb on + strand, within CCNA_03020at 3175.201 kb on - strand, within CCNA_03020at 3175.202 kb on - strand, within CCNA_03020at 3175.260 kb on + strand, within CCNA_03020at 3175.290 kb on + strand, within CCNA_03020at 3175.339 kb on + strand, within CCNA_03020at 3175.390 kb on + strand, within CCNA_03020at 3175.397 kb on - strand, within CCNA_03020at 3175.433 kb on - strand, within CCNA_03020at 3175.479 kb on + strand, within CCNA_03020at 3175.482 kb on - strand, within CCNA_03020at 3175.489 kb on + strand, within CCNA_03020at 3175.638 kb on + strandat 3175.667 kb on + strand, within CCNA_03021at 3175.769 kb on - strand, within CCNA_03021at 3175.812 kb on + strand, within CCNA_03021at 3175.853 kb on + strandat 3175.896 kb on + strandat 3175.972 kb on + strand, within CCNA_03022at 3175.973 kb on - strand, within CCNA_03022at 3175.973 kb on - strand, within CCNA_03022at 3175.974 kb on - strand, within CCNA_03022at 3176.033 kb on + strand, within CCNA_03022at 3176.041 kb on - strand, within CCNA_03022at 3176.049 kb on - strand, within CCNA_03022at 3176.076 kb on + strand, within CCNA_03022at 3176.101 kb on + strand, within CCNA_03022at 3176.193 kb on + strand, within CCNA_03022at 3176.196 kb on - strand, within CCNA_03022at 3176.206 kb on - strand, within CCNA_03022at 3176.217 kb on + strand, within CCNA_03022at 3176.217 kb on + strand, within CCNA_03022at 3176.225 kb on - strand, within CCNA_03022at 3176.225 kb on - strand, within CCNA_03022at 3176.225 kb on - strand, within CCNA_03022at 3176.354 kb on + strand, within CCNA_03022at 3176.354 kb on + strand, within CCNA_03022at 3176.360 kb on + strand, within CCNA_03022at 3176.362 kb on - strand, within CCNA_03022at 3176.385 kb on + strand, within CCNA_03022at 3176.385 kb on + strand, within CCNA_03022at 3176.448 kb on - strand, within CCNA_03022at 3176.448 kb on - strand, within CCNA_03022at 3176.466 kb on - strand, within CCNA_03022at 3176.476 kb on - strand, within CCNA_03022at 3176.479 kb on + strand, within CCNA_03022at 3176.479 kb on + strand, within CCNA_03022at 3176.605 kb on + strand, within CCNA_03022at 3176.682 kb on + strand, within CCNA_03022at 3176.682 kb on + strand, within CCNA_03022at 3176.734 kb on + strand, within CCNA_03022at 3176.734 kb on + strand, within CCNA_03022at 3176.749 kb on - strand, within CCNA_03022at 3176.749 kb on - strand, within CCNA_03022at 3176.749 kb on - strand, within CCNA_03022at 3176.775 kb on - strand, within CCNA_03022at 3176.789 kb on - strand, within CCNA_03022at 3177.049 kb on - strandat 3177.134 kb on - strandat 3177.135 kb on + strandat 3177.135 kb on + strandat 3177.143 kb on - strand, within CCNA_03023at 3177.172 kb on + strand, within CCNA_03023at 3177.225 kb on + strand, within CCNA_03023at 3177.233 kb on - strand, within CCNA_03023at 3177.233 kb on - strand, within CCNA_03023at 3177.275 kb on - strand, within CCNA_03023at 3177.403 kb on + strand, within CCNA_03023at 3177.427 kb on - strand, within CCNA_03023at 3177.427 kb on - strand, within CCNA_03023at 3177.515 kb on - strand, within CCNA_03023at 3177.542 kb on - strand, within CCNA_03023at 3177.560 kb on - strand, within CCNA_03023at 3177.560 kb on - strand, within CCNA_03023at 3177.565 kb on - strand, within CCNA_03023at 3177.571 kb on - strand, within CCNA_03023at 3177.584 kb on + strand, within CCNA_03023at 3177.630 kb on + strand, within CCNA_03023at 3177.640 kb on - strand, within CCNA_03023at 3177.724 kb on - strand, within CCNA_03023at 3177.724 kb on - strand, within CCNA_03023at 3177.735 kb on - strand, within CCNA_03023at 3177.747 kb on + strand, within CCNA_03023at 3177.788 kb on - strand, within CCNA_03023at 3177.803 kb on - strand, within CCNA_03023at 3177.948 kb on + strand, within CCNA_03023at 3177.956 kb on - strand, within CCNA_03023

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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3,174,831 + CCNA_03020 0.29 +0.9
3,174,838 + CCNA_03020 0.29 +0.5
3,174,868 + CCNA_03020 0.32 +0.7
3,174,873 + CCNA_03020 0.32 -0.8
3,174,876 - CCNA_03020 0.33 +0.2
3,174,881 - CCNA_03020 0.33 +0.1
3,174,881 - CCNA_03020 0.33 -0.6
3,174,881 - CCNA_03020 0.33 +0.0
3,174,902 + CCNA_03020 0.35 +1.0
3,174,979 + CCNA_03020 0.42 -0.1
3,174,986 + CCNA_03020 0.42 -0.1
3,175,054 + CCNA_03020 0.48 -0.8
3,175,054 + CCNA_03020 0.48 -0.0
3,175,054 + CCNA_03020 0.48 +0.4
3,175,059 + CCNA_03020 0.49 +0.1
3,175,062 - CCNA_03020 0.49 +0.1
3,175,077 + CCNA_03020 0.50 -0.6
3,175,080 - CCNA_03020 0.51 +0.1
3,175,084 + CCNA_03020 0.51 +0.1
3,175,108 + CCNA_03020 0.53 -0.0
3,175,149 + CCNA_03020 0.57 -0.1
3,175,152 - CCNA_03020 0.57 -0.2
3,175,155 + CCNA_03020 0.57 -0.4
3,175,155 + CCNA_03020 0.57 -0.3
3,175,155 + CCNA_03020 0.57 -0.5
3,175,155 + CCNA_03020 0.57 +0.3
3,175,157 - CCNA_03020 0.58 +0.9
3,175,163 - CCNA_03020 0.58 +0.5
3,175,163 - CCNA_03020 0.58 +0.1
3,175,163 - CCNA_03020 0.58 +0.3
3,175,163 - CCNA_03020 0.58 +0.2
3,175,163 - CCNA_03020 0.58 +0.5
3,175,163 - CCNA_03020 0.58 -0.5
3,175,163 - CCNA_03020 0.58 +0.2
3,175,163 - CCNA_03020 0.58 +0.6
3,175,163 - CCNA_03020 0.58 +0.9
3,175,170 - CCNA_03020 0.59 -0.3
3,175,177 + CCNA_03020 0.59 +0.5
3,175,201 - CCNA_03020 0.61 +0.4
3,175,202 - CCNA_03020 0.62 +0.4
3,175,260 + CCNA_03020 0.67 -1.0
3,175,290 + CCNA_03020 0.69 +0.5
3,175,339 + CCNA_03020 0.74 -1.2
3,175,390 + CCNA_03020 0.78 -0.1
3,175,397 - CCNA_03020 0.79 -0.6
3,175,433 - CCNA_03020 0.82 +1.4
3,175,479 + CCNA_03020 0.86 -0.6
3,175,482 - CCNA_03020 0.86 +0.5
3,175,489 + CCNA_03020 0.87 -0.2
3,175,638 + -0.1
3,175,667 + CCNA_03021 0.10 +0.1
3,175,769 - CCNA_03021 0.58 -0.0
3,175,812 + CCNA_03021 0.78 +0.6
3,175,853 + +0.2
3,175,896 + +0.2
3,175,972 + CCNA_03022 0.12 +0.1
3,175,973 - CCNA_03022 0.12 +0.7
3,175,973 - CCNA_03022 0.12 +0.0
3,175,974 - CCNA_03022 0.12 -0.6
3,176,033 + CCNA_03022 0.17 -0.8
3,176,041 - CCNA_03022 0.18 +0.2
3,176,049 - CCNA_03022 0.19 +0.3
3,176,076 + CCNA_03022 0.21 +0.6
3,176,101 + CCNA_03022 0.23 -3.2
3,176,193 + CCNA_03022 0.31 +1.2
3,176,196 - CCNA_03022 0.31 -0.1
3,176,206 - CCNA_03022 0.32 -0.1
3,176,217 + CCNA_03022 0.33 -2.0
3,176,217 + CCNA_03022 0.33 -1.5
3,176,225 - CCNA_03022 0.34 +0.1
3,176,225 - CCNA_03022 0.34 -0.4
3,176,225 - CCNA_03022 0.34 +0.2
3,176,354 + CCNA_03022 0.44 +0.2
3,176,354 + CCNA_03022 0.44 +0.4
3,176,360 + CCNA_03022 0.45 -0.6
3,176,362 - CCNA_03022 0.45 -0.3
3,176,385 + CCNA_03022 0.47 +0.5
3,176,385 + CCNA_03022 0.47 -0.9
3,176,448 - CCNA_03022 0.52 -0.5
3,176,448 - CCNA_03022 0.52 -0.4
3,176,466 - CCNA_03022 0.54 +0.3
3,176,476 - CCNA_03022 0.55 -0.3
3,176,479 + CCNA_03022 0.55 -0.7
3,176,479 + CCNA_03022 0.55 +0.0
3,176,605 + CCNA_03022 0.66 +0.1
3,176,682 + CCNA_03022 0.72 +0.4
3,176,682 + CCNA_03022 0.72 +0.5
3,176,734 + CCNA_03022 0.77 -1.3
3,176,734 + CCNA_03022 0.77 +0.1
3,176,749 - CCNA_03022 0.78 +0.3
3,176,749 - CCNA_03022 0.78 +0.3
3,176,749 - CCNA_03022 0.78 +0.1
3,176,775 - CCNA_03022 0.80 -0.3
3,176,789 - CCNA_03022 0.81 +0.0
3,177,049 - +0.6
3,177,134 - +0.4
3,177,135 + -0.2
3,177,135 + +0.9
3,177,143 - CCNA_03023 0.10 +0.8
3,177,172 + CCNA_03023 0.12 -1.4
3,177,225 + CCNA_03023 0.14 +0.5
3,177,233 - CCNA_03023 0.14 +0.5
3,177,233 - CCNA_03023 0.14 +0.2
3,177,275 - CCNA_03023 0.16 +0.2
3,177,403 + CCNA_03023 0.22 -0.6
3,177,427 - CCNA_03023 0.23 +0.2
3,177,427 - CCNA_03023 0.23 +0.3
3,177,515 - CCNA_03023 0.27 +0.7
3,177,542 - CCNA_03023 0.29 +0.3
3,177,560 - CCNA_03023 0.30 +0.4
3,177,560 - CCNA_03023 0.30 +0.6
3,177,565 - CCNA_03023 0.30 +0.1
3,177,571 - CCNA_03023 0.30 +0.3
3,177,584 + CCNA_03023 0.31 -1.2
3,177,630 + CCNA_03023 0.33 +0.1
3,177,640 - CCNA_03023 0.33 +0.1
3,177,724 - CCNA_03023 0.37 +0.5
3,177,724 - CCNA_03023 0.37 -0.1
3,177,735 - CCNA_03023 0.38 +0.3
3,177,747 + CCNA_03023 0.38 -0.6
3,177,788 - CCNA_03023 0.40 +0.5
3,177,803 - CCNA_03023 0.41 +0.4
3,177,948 + CCNA_03023 0.47 -0.5
3,177,956 - CCNA_03023 0.48 +0.7

Or see this region's nucleotide sequence