Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02269

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02268 and CCNA_R0053 are separated by 214 nucleotidesCCNA_R0053 and CCNA_02269 are separated by 101 nucleotidesCCNA_02269 and CCNA_02270 are separated by 117 nucleotidesCCNA_02270 and CCNA_02271 are separated by 227 nucleotides CCNA_02267: CCNA_02267 - serine hydrolase family protein, at 2,420,364 to 2,420,987 _02267 CCNA_02268: CCNA_02268 - laminin G domain protein, at 2,420,938 to 2,421,585 _02268 CCNA_R0053: CCNA_R0053 - tRNA-Leu, at 2,421,800 to 2,421,884 _R0053 CCNA_02269: CCNA_02269 - L-aminopeptidase/D-esterase dmpA, at 2,421,986 to 2,422,978 _02269 CCNA_02270: CCNA_02270 - MarR-family transcriptional regulator, at 2,423,096 to 2,423,605 _02270 CCNA_02271: CCNA_02271 - stalk cross-band protein StpD, at 2,423,833 to 2,424,618 _02271 Position (kb) 2421 2422 2423Strain fitness (log2 ratio) -2 -1 0 1at 2421.041 kb on - strand, within CCNA_02268at 2421.055 kb on + strand, within CCNA_02268at 2421.063 kb on - strand, within CCNA_02268at 2421.069 kb on + strand, within CCNA_02268at 2421.077 kb on - strand, within CCNA_02268at 2421.079 kb on + strand, within CCNA_02268at 2421.099 kb on + strand, within CCNA_02268at 2421.100 kb on - strand, within CCNA_02268at 2421.118 kb on + strand, within CCNA_02268at 2421.139 kb on + strand, within CCNA_02268at 2421.147 kb on - strand, within CCNA_02268at 2421.147 kb on - strand, within CCNA_02268at 2421.147 kb on - strand, within CCNA_02268at 2421.152 kb on + strand, within CCNA_02268at 2421.234 kb on + strand, within CCNA_02268at 2421.236 kb on + strand, within CCNA_02268at 2421.236 kb on + strand, within CCNA_02268at 2421.236 kb on + strand, within CCNA_02268at 2421.236 kb on + strand, within CCNA_02268at 2421.237 kb on - strand, within CCNA_02268at 2421.244 kb on - strand, within CCNA_02268at 2421.244 kb on - strand, within CCNA_02268at 2421.249 kb on - strand, within CCNA_02268at 2421.307 kb on - strand, within CCNA_02268at 2421.307 kb on - strand, within CCNA_02268at 2421.334 kb on - strand, within CCNA_02268at 2421.382 kb on - strand, within CCNA_02268at 2421.383 kb on - strand, within CCNA_02268at 2421.392 kb on - strand, within CCNA_02268at 2421.474 kb on + strand, within CCNA_02268at 2421.589 kb on - strandat 2421.625 kb on + strandat 2421.630 kb on + strandat 2421.695 kb on + strandat 2421.956 kb on + strandat 2421.956 kb on + strandat 2421.956 kb on + strandat 2421.964 kb on - strandat 2421.988 kb on + strandat 2421.996 kb on - strandat 2422.029 kb on + strandat 2422.037 kb on - strandat 2422.071 kb on + strandat 2422.084 kb on + strandat 2422.085 kb on - strandat 2422.089 kb on + strand, within CCNA_02269at 2422.097 kb on - strand, within CCNA_02269at 2422.097 kb on - strand, within CCNA_02269at 2422.097 kb on - strand, within CCNA_02269at 2422.110 kb on + strand, within CCNA_02269at 2422.128 kb on - strand, within CCNA_02269at 2422.243 kb on + strand, within CCNA_02269at 2422.243 kb on + strand, within CCNA_02269at 2422.245 kb on + strand, within CCNA_02269at 2422.245 kb on + strand, within CCNA_02269at 2422.245 kb on + strand, within CCNA_02269at 2422.245 kb on + strand, within CCNA_02269at 2422.253 kb on - strand, within CCNA_02269at 2422.253 kb on - strand, within CCNA_02269at 2422.336 kb on + strand, within CCNA_02269at 2422.357 kb on - strand, within CCNA_02269at 2422.362 kb on - strand, within CCNA_02269at 2422.454 kb on - strand, within CCNA_02269at 2422.558 kb on - strand, within CCNA_02269at 2422.635 kb on + strand, within CCNA_02269at 2422.659 kb on + strand, within CCNA_02269at 2422.731 kb on + strand, within CCNA_02269at 2422.783 kb on - strand, within CCNA_02269at 2422.799 kb on + strand, within CCNA_02269at 2422.952 kb on + strandat 2422.960 kb on - strandat 2422.989 kb on - strandat 2423.086 kb on + strandat 2423.093 kb on + strandat 2423.094 kb on + strandat 2423.101 kb on - strandat 2423.102 kb on + strandat 2423.280 kb on - strand, within CCNA_02270at 2423.325 kb on - strand, within CCNA_02270at 2423.338 kb on + strand, within CCNA_02270at 2423.391 kb on + strand, within CCNA_02270at 2423.391 kb on + strand, within CCNA_02270at 2423.425 kb on - strand, within CCNA_02270at 2423.450 kb on + strand, within CCNA_02270at 2423.458 kb on - strand, within CCNA_02270at 2423.572 kb on + strandat 2423.580 kb on - strandat 2423.614 kb on + strandat 2423.662 kb on - strandat 2423.698 kb on - strandat 2423.723 kb on - strandat 2423.723 kb on - strandat 2423.754 kb on + strandat 2423.831 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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2,421,041 - CCNA_02268 0.16 +0.5
2,421,055 + CCNA_02268 0.18 +1.1
2,421,063 - CCNA_02268 0.19 +0.0
2,421,069 + CCNA_02268 0.20 -0.5
2,421,077 - CCNA_02268 0.21 -1.8
2,421,079 + CCNA_02268 0.22 -0.4
2,421,099 + CCNA_02268 0.25 -0.2
2,421,100 - CCNA_02268 0.25 +1.0
2,421,118 + CCNA_02268 0.28 +0.7
2,421,139 + CCNA_02268 0.31 +0.2
2,421,147 - CCNA_02268 0.32 -0.1
2,421,147 - CCNA_02268 0.32 -0.8
2,421,147 - CCNA_02268 0.32 +0.3
2,421,152 + CCNA_02268 0.33 -0.5
2,421,234 + CCNA_02268 0.46 -1.1
2,421,236 + CCNA_02268 0.46 -1.6
2,421,236 + CCNA_02268 0.46 -0.4
2,421,236 + CCNA_02268 0.46 +0.0
2,421,236 + CCNA_02268 0.46 +1.5
2,421,237 - CCNA_02268 0.46 -0.2
2,421,244 - CCNA_02268 0.47 -0.3
2,421,244 - CCNA_02268 0.47 -1.2
2,421,249 - CCNA_02268 0.48 +0.4
2,421,307 - CCNA_02268 0.57 -0.0
2,421,307 - CCNA_02268 0.57 -0.9
2,421,334 - CCNA_02268 0.61 -0.7
2,421,382 - CCNA_02268 0.69 +1.2
2,421,383 - CCNA_02268 0.69 +0.1
2,421,392 - CCNA_02268 0.70 -1.0
2,421,474 + CCNA_02268 0.83 -0.4
2,421,589 - -2.5
2,421,625 + -0.1
2,421,630 + -0.7
2,421,695 + +0.1
2,421,956 + +0.0
2,421,956 + -0.1
2,421,956 + +0.3
2,421,964 - +0.2
2,421,988 + +0.2
2,421,996 - -0.3
2,422,029 + +0.5
2,422,037 - -0.2
2,422,071 + +0.8
2,422,084 + +0.2
2,422,085 - -0.8
2,422,089 + CCNA_02269 0.10 +0.2
2,422,097 - CCNA_02269 0.11 +0.5
2,422,097 - CCNA_02269 0.11 +0.1
2,422,097 - CCNA_02269 0.11 +0.6
2,422,110 + CCNA_02269 0.12 +0.3
2,422,128 - CCNA_02269 0.14 +0.1
2,422,243 + CCNA_02269 0.26 -0.9
2,422,243 + CCNA_02269 0.26 +1.3
2,422,245 + CCNA_02269 0.26 -1.2
2,422,245 + CCNA_02269 0.26 -0.4
2,422,245 + CCNA_02269 0.26 -0.0
2,422,245 + CCNA_02269 0.26 +1.3
2,422,253 - CCNA_02269 0.27 +0.3
2,422,253 - CCNA_02269 0.27 -0.0
2,422,336 + CCNA_02269 0.35 -0.0
2,422,357 - CCNA_02269 0.37 -0.3
2,422,362 - CCNA_02269 0.38 -0.4
2,422,454 - CCNA_02269 0.47 -0.1
2,422,558 - CCNA_02269 0.58 +0.3
2,422,635 + CCNA_02269 0.65 -0.8
2,422,659 + CCNA_02269 0.68 +0.8
2,422,731 + CCNA_02269 0.75 -0.2
2,422,783 - CCNA_02269 0.80 -0.1
2,422,799 + CCNA_02269 0.82 -0.2
2,422,952 + -0.5
2,422,960 - +0.6
2,422,989 - +0.1
2,423,086 + +0.5
2,423,093 + +0.2
2,423,094 + +0.5
2,423,101 - +0.4
2,423,102 + -0.3
2,423,280 - CCNA_02270 0.36 +0.5
2,423,325 - CCNA_02270 0.45 +1.7
2,423,338 + CCNA_02270 0.47 -1.0
2,423,391 + CCNA_02270 0.58 +0.5
2,423,391 + CCNA_02270 0.58 -2.3
2,423,425 - CCNA_02270 0.65 -0.1
2,423,450 + CCNA_02270 0.69 -0.1
2,423,458 - CCNA_02270 0.71 +0.4
2,423,572 + -0.6
2,423,580 - -0.2
2,423,614 + -1.6
2,423,662 - +1.7
2,423,698 - +0.2
2,423,723 - -0.4
2,423,723 - +0.3
2,423,754 + +0.4
2,423,831 + +1.6

Or see this region's nucleotide sequence