Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02161

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02159 and CCNA_02160 are separated by 110 nucleotidesCCNA_02160 and CCNA_02161 are separated by 131 nucleotidesCCNA_02161 and CCNA_02163 are separated by 322 nucleotides CCNA_02159: CCNA_02159 - hypothetical protein, at 2,314,921 to 2,315,475 _02159 CCNA_02160: CCNA_02160 - hypothetical protein, at 2,315,586 to 2,316,095 _02160 CCNA_02161: CCNA_02161 - TetR-family transcriptional regulator, at 2,316,227 to 2,316,895 _02161 CCNA_02163: CCNA_02163 - hypothetical protein, at 2,317,218 to 2,318,078 _02163 Position (kb) 2316 2317Strain fitness (log2 ratio) -2 -1 0 1at 2315.247 kb on + strand, within CCNA_02159at 2315.281 kb on + strand, within CCNA_02159at 2315.289 kb on - strand, within CCNA_02159at 2315.299 kb on - strand, within CCNA_02159at 2315.323 kb on - strand, within CCNA_02159at 2315.353 kb on + strand, within CCNA_02159at 2315.373 kb on + strand, within CCNA_02159at 2315.381 kb on - strand, within CCNA_02159at 2315.388 kb on + strand, within CCNA_02159at 2315.388 kb on + strand, within CCNA_02159at 2315.388 kb on + strand, within CCNA_02159at 2315.396 kb on - strand, within CCNA_02159at 2315.396 kb on - strand, within CCNA_02159at 2315.396 kb on - strand, within CCNA_02159at 2315.396 kb on - strand, within CCNA_02159at 2315.396 kb on - strand, within CCNA_02159at 2315.396 kb on - strand, within CCNA_02159at 2315.396 kb on - strand, within CCNA_02159at 2315.396 kb on - strand, within CCNA_02159at 2315.396 kb on - strand, within CCNA_02159at 2315.396 kb on - strand, within CCNA_02159at 2315.396 kb on - strand, within CCNA_02159at 2315.425 kb on + strandat 2315.561 kb on - strandat 2315.596 kb on - strandat 2315.596 kb on - strandat 2315.621 kb on - strandat 2315.633 kb on + strandat 2315.641 kb on - strand, within CCNA_02160at 2315.661 kb on - strand, within CCNA_02160at 2315.800 kb on - strand, within CCNA_02160at 2315.817 kb on - strand, within CCNA_02160at 2315.819 kb on + strand, within CCNA_02160at 2315.827 kb on - strand, within CCNA_02160at 2315.844 kb on - strand, within CCNA_02160at 2315.923 kb on - strand, within CCNA_02160at 2316.046 kb on + strandat 2316.054 kb on - strandat 2316.054 kb on - strandat 2316.322 kb on + strand, within CCNA_02161at 2316.356 kb on - strand, within CCNA_02161at 2316.607 kb on + strand, within CCNA_02161at 2316.661 kb on - strand, within CCNA_02161at 2316.669 kb on + strand, within CCNA_02161at 2316.677 kb on - strand, within CCNA_02161at 2316.719 kb on - strand, within CCNA_02161at 2316.719 kb on - strand, within CCNA_02161at 2316.733 kb on + strand, within CCNA_02161at 2316.742 kb on - strand, within CCNA_02161at 2316.819 kb on - strand, within CCNA_02161at 2316.908 kb on + strandat 2316.939 kb on - strandat 2317.011 kb on - strandat 2317.011 kb on - strandat 2317.011 kb on - strandat 2317.023 kb on - strandat 2317.029 kb on - strandat 2317.085 kb on + strandat 2317.152 kb on + strandat 2317.152 kb on + strandat 2317.162 kb on - strandat 2317.173 kb on + strandat 2317.173 kb on + strandat 2317.173 kb on - strandat 2317.176 kb on - strandat 2317.181 kb on - strandat 2317.181 kb on - strandat 2317.186 kb on - strandat 2317.196 kb on + strandat 2317.196 kb on + strandat 2317.196 kb on + strandat 2317.196 kb on + strandat 2317.196 kb on + strandat 2317.196 kb on + strandat 2317.204 kb on - strandat 2317.204 kb on - strandat 2317.204 kb on - strandat 2317.204 kb on - strandat 2317.204 kb on - strandat 2317.204 kb on - strandat 2317.204 kb on - strandat 2317.305 kb on + strand, within CCNA_02163at 2317.357 kb on + strand, within CCNA_02163at 2317.365 kb on - strand, within CCNA_02163at 2317.365 kb on - strand, within CCNA_02163at 2317.365 kb on - strand, within CCNA_02163at 2317.500 kb on + strand, within CCNA_02163at 2317.578 kb on + strand, within CCNA_02163at 2317.586 kb on - strand, within CCNA_02163at 2317.607 kb on + strand, within CCNA_02163at 2317.622 kb on + strand, within CCNA_02163at 2317.628 kb on + strand, within CCNA_02163at 2317.628 kb on + strand, within CCNA_02163at 2317.655 kb on + strand, within CCNA_02163at 2317.655 kb on + strand, within CCNA_02163at 2317.655 kb on + strand, within CCNA_02163at 2317.663 kb on - strand, within CCNA_02163at 2317.663 kb on - strand, within CCNA_02163at 2317.663 kb on - strand, within CCNA_02163at 2317.699 kb on - strand, within CCNA_02163at 2317.756 kb on - strand, within CCNA_02163at 2317.768 kb on - strand, within CCNA_02163at 2317.811 kb on - strand, within CCNA_02163at 2317.856 kb on + strand, within CCNA_02163at 2317.864 kb on + strand, within CCNA_02163at 2317.864 kb on + strand, within CCNA_02163at 2317.864 kb on - strand, within CCNA_02163at 2317.872 kb on - strand, within CCNA_02163at 2317.872 kb on - strand, within CCNA_02163

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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2,315,247 + CCNA_02159 0.59 -0.7
2,315,281 + CCNA_02159 0.65 -0.6
2,315,289 - CCNA_02159 0.66 +0.0
2,315,299 - CCNA_02159 0.68 -0.2
2,315,323 - CCNA_02159 0.72 +0.2
2,315,353 + CCNA_02159 0.78 +0.4
2,315,373 + CCNA_02159 0.81 -0.3
2,315,381 - CCNA_02159 0.83 +1.1
2,315,388 + CCNA_02159 0.84 -0.8
2,315,388 + CCNA_02159 0.84 +0.7
2,315,388 + CCNA_02159 0.84 +0.7
2,315,396 - CCNA_02159 0.86 -0.1
2,315,396 - CCNA_02159 0.86 -0.8
2,315,396 - CCNA_02159 0.86 +1.5
2,315,396 - CCNA_02159 0.86 +0.3
2,315,396 - CCNA_02159 0.86 -0.3
2,315,396 - CCNA_02159 0.86 -0.3
2,315,396 - CCNA_02159 0.86 -1.2
2,315,396 - CCNA_02159 0.86 +0.4
2,315,396 - CCNA_02159 0.86 -0.5
2,315,396 - CCNA_02159 0.86 +0.1
2,315,396 - CCNA_02159 0.86 -1.1
2,315,425 + +0.3
2,315,561 - +0.1
2,315,596 - +0.2
2,315,596 - +0.1
2,315,621 - -0.3
2,315,633 + -0.8
2,315,641 - CCNA_02160 0.11 +0.2
2,315,661 - CCNA_02160 0.15 +0.5
2,315,800 - CCNA_02160 0.42 +0.5
2,315,817 - CCNA_02160 0.45 -0.1
2,315,819 + CCNA_02160 0.46 +0.2
2,315,827 - CCNA_02160 0.47 -0.6
2,315,844 - CCNA_02160 0.51 +0.6
2,315,923 - CCNA_02160 0.66 +0.2
2,316,046 + -0.2
2,316,054 - -1.1
2,316,054 - -0.4
2,316,322 + CCNA_02161 0.14 +1.2
2,316,356 - CCNA_02161 0.19 -1.0
2,316,607 + CCNA_02161 0.57 -0.8
2,316,661 - CCNA_02161 0.65 -0.7
2,316,669 + CCNA_02161 0.66 -0.6
2,316,677 - CCNA_02161 0.67 +1.3
2,316,719 - CCNA_02161 0.74 -2.0
2,316,719 - CCNA_02161 0.74 -0.9
2,316,733 + CCNA_02161 0.76 -0.2
2,316,742 - CCNA_02161 0.77 +0.3
2,316,819 - CCNA_02161 0.88 -0.3
2,316,908 + +1.6
2,316,939 - -0.2
2,317,011 - -0.3
2,317,011 - -0.3
2,317,011 - -0.1
2,317,023 - +0.2
2,317,029 - -1.5
2,317,085 + +0.5
2,317,152 + -0.6
2,317,152 + +0.1
2,317,162 - -0.4
2,317,173 + +0.0
2,317,173 + +0.0
2,317,173 - -0.3
2,317,176 - +0.3
2,317,181 - +0.1
2,317,181 - +0.6
2,317,186 - +0.5
2,317,196 + -0.1
2,317,196 + -0.1
2,317,196 + +0.2
2,317,196 + -1.2
2,317,196 + -0.3
2,317,196 + +1.1
2,317,204 - +0.7
2,317,204 - -0.2
2,317,204 - -0.5
2,317,204 - -0.0
2,317,204 - +0.5
2,317,204 - -1.5
2,317,204 - +1.5
2,317,305 + CCNA_02163 0.10 +0.3
2,317,357 + CCNA_02163 0.16 +0.0
2,317,365 - CCNA_02163 0.17 +0.2
2,317,365 - CCNA_02163 0.17 -1.1
2,317,365 - CCNA_02163 0.17 -0.1
2,317,500 + CCNA_02163 0.33 -1.5
2,317,578 + CCNA_02163 0.42 -1.3
2,317,586 - CCNA_02163 0.43 +0.4
2,317,607 + CCNA_02163 0.45 -0.0
2,317,622 + CCNA_02163 0.47 +0.0
2,317,628 + CCNA_02163 0.48 -0.1
2,317,628 + CCNA_02163 0.48 +0.3
2,317,655 + CCNA_02163 0.51 +0.4
2,317,655 + CCNA_02163 0.51 +0.4
2,317,655 + CCNA_02163 0.51 +0.5
2,317,663 - CCNA_02163 0.52 +1.3
2,317,663 - CCNA_02163 0.52 -0.3
2,317,663 - CCNA_02163 0.52 -0.8
2,317,699 - CCNA_02163 0.56 +0.4
2,317,756 - CCNA_02163 0.62 +0.1
2,317,768 - CCNA_02163 0.64 +0.5
2,317,811 - CCNA_02163 0.69 +0.3
2,317,856 + CCNA_02163 0.74 +0.6
2,317,864 + CCNA_02163 0.75 -0.4
2,317,864 + CCNA_02163 0.75 -0.4
2,317,864 - CCNA_02163 0.75 -0.5
2,317,872 - CCNA_02163 0.76 -0.2
2,317,872 - CCNA_02163 0.76 +0.7

Or see this region's nucleotide sequence