Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_02066

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02065 and CCNA_02066 are separated by 134 nucleotidesCCNA_02066 and CCNA_02067 are separated by 71 nucleotidesCCNA_02067 and CCNA_02068 are separated by 95 nucleotides CCNA_02065: CCNA_02065 - acylamino-acid-releasing enzyme, at 2,215,780 to 2,217,882 _02065 CCNA_02066: CCNA_02066 - phytoene/squalene synthase family protein, at 2,218,017 to 2,218,730 _02066 CCNA_02067: CCNA_02067 - conserved membrane spanning protein, at 2,218,802 to 2,219,416 _02067 CCNA_02068: CCNA_02068 - Mth938-like membrane protein, at 2,219,512 to 2,219,865 _02068 Position (kb) 2218 2219Strain fitness (log2 ratio) -2 -1 0 1 2at 2217.081 kb on - strand, within CCNA_02065at 2217.089 kb on + strand, within CCNA_02065at 2217.099 kb on + strand, within CCNA_02065at 2217.120 kb on - strand, within CCNA_02065at 2217.130 kb on + strand, within CCNA_02065at 2217.130 kb on + strand, within CCNA_02065at 2217.138 kb on - strand, within CCNA_02065at 2217.158 kb on + strand, within CCNA_02065at 2217.229 kb on + strand, within CCNA_02065at 2217.255 kb on + strand, within CCNA_02065at 2217.263 kb on - strand, within CCNA_02065at 2217.319 kb on - strand, within CCNA_02065at 2217.321 kb on + strand, within CCNA_02065at 2217.321 kb on + strand, within CCNA_02065at 2217.345 kb on + strand, within CCNA_02065at 2217.353 kb on - strand, within CCNA_02065at 2217.382 kb on + strand, within CCNA_02065at 2217.389 kb on + strand, within CCNA_02065at 2217.390 kb on - strand, within CCNA_02065at 2217.411 kb on - strand, within CCNA_02065at 2217.455 kb on - strand, within CCNA_02065at 2217.548 kb on - strand, within CCNA_02065at 2217.564 kb on + strand, within CCNA_02065at 2217.616 kb on + strand, within CCNA_02065at 2217.662 kb on + strand, within CCNA_02065at 2217.718 kb on - strandat 2217.751 kb on + strandat 2217.762 kb on + strandat 2217.768 kb on + strandat 2217.771 kb on - strandat 2217.774 kb on + strandat 2217.801 kb on + strandat 2217.802 kb on + strandat 2217.810 kb on - strandat 2217.822 kb on + strandat 2217.900 kb on + strandat 2217.908 kb on - strandat 2217.944 kb on - strandat 2217.959 kb on + strandat 2217.975 kb on - strandat 2217.999 kb on + strandat 2218.168 kb on + strand, within CCNA_02066at 2218.176 kb on - strand, within CCNA_02066at 2218.176 kb on - strand, within CCNA_02066at 2218.478 kb on - strand, within CCNA_02066at 2218.478 kb on - strand, within CCNA_02066at 2218.478 kb on - strand, within CCNA_02066at 2218.553 kb on - strand, within CCNA_02066at 2218.675 kb on - strandat 2218.680 kb on + strandat 2218.726 kb on + strandat 2218.840 kb on + strandat 2218.866 kb on - strand, within CCNA_02067at 2218.902 kb on + strand, within CCNA_02067at 2218.904 kb on - strand, within CCNA_02067at 2218.904 kb on - strand, within CCNA_02067at 2218.973 kb on - strand, within CCNA_02067at 2218.997 kb on + strand, within CCNA_02067at 2219.010 kb on - strand, within CCNA_02067at 2219.018 kb on + strand, within CCNA_02067at 2219.018 kb on + strand, within CCNA_02067at 2219.049 kb on - strand, within CCNA_02067at 2219.073 kb on - strand, within CCNA_02067at 2219.075 kb on - strand, within CCNA_02067at 2219.126 kb on + strand, within CCNA_02067at 2219.153 kb on - strand, within CCNA_02067at 2219.249 kb on - strand, within CCNA_02067at 2219.368 kb on - strandat 2219.528 kb on + strandat 2219.554 kb on + strand, within CCNA_02068at 2219.562 kb on - strand, within CCNA_02068at 2219.588 kb on + strand, within CCNA_02068at 2219.627 kb on - strand, within CCNA_02068at 2219.654 kb on + strand, within CCNA_02068at 2219.659 kb on + strand, within CCNA_02068at 2219.659 kb on + strand, within CCNA_02068at 2219.724 kb on + strand, within CCNA_02068

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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2,217,081 - CCNA_02065 0.62 -0.2
2,217,089 + CCNA_02065 0.62 +0.7
2,217,099 + CCNA_02065 0.63 +0.2
2,217,120 - CCNA_02065 0.64 -1.6
2,217,130 + CCNA_02065 0.64 +0.5
2,217,130 + CCNA_02065 0.64 -0.7
2,217,138 - CCNA_02065 0.65 -0.1
2,217,158 + CCNA_02065 0.66 +0.4
2,217,229 + CCNA_02065 0.69 +0.1
2,217,255 + CCNA_02065 0.70 +0.3
2,217,263 - CCNA_02065 0.71 -0.8
2,217,319 - CCNA_02065 0.73 -0.7
2,217,321 + CCNA_02065 0.73 +0.0
2,217,321 + CCNA_02065 0.73 -0.1
2,217,345 + CCNA_02065 0.74 +0.3
2,217,353 - CCNA_02065 0.75 +1.2
2,217,382 + CCNA_02065 0.76 -0.5
2,217,389 + CCNA_02065 0.77 +0.5
2,217,390 - CCNA_02065 0.77 -0.1
2,217,411 - CCNA_02065 0.78 -0.3
2,217,455 - CCNA_02065 0.80 -0.0
2,217,548 - CCNA_02065 0.84 -0.3
2,217,564 + CCNA_02065 0.85 -0.0
2,217,616 + CCNA_02065 0.87 +0.3
2,217,662 + CCNA_02065 0.89 +0.3
2,217,718 - -1.0
2,217,751 + +0.5
2,217,762 + -0.0
2,217,768 + +0.1
2,217,771 - -0.9
2,217,774 + +0.8
2,217,801 + -0.4
2,217,802 + +0.0
2,217,810 - -0.5
2,217,822 + +0.4
2,217,900 + +0.2
2,217,908 - -2.2
2,217,944 - +0.3
2,217,959 + +0.7
2,217,975 - +0.1
2,217,999 + -1.0
2,218,168 + CCNA_02066 0.21 +0.0
2,218,176 - CCNA_02066 0.22 -0.0
2,218,176 - CCNA_02066 0.22 +1.0
2,218,478 - CCNA_02066 0.65 +0.5
2,218,478 - CCNA_02066 0.65 +0.8
2,218,478 - CCNA_02066 0.65 -0.0
2,218,553 - CCNA_02066 0.75 +0.1
2,218,675 - -0.1
2,218,680 + -0.1
2,218,726 + +1.0
2,218,840 + -0.9
2,218,866 - CCNA_02067 0.10 +2.0
2,218,902 + CCNA_02067 0.16 -0.7
2,218,904 - CCNA_02067 0.17 +1.0
2,218,904 - CCNA_02067 0.17 +0.1
2,218,973 - CCNA_02067 0.28 +0.3
2,218,997 + CCNA_02067 0.32 -0.2
2,219,010 - CCNA_02067 0.34 -0.1
2,219,018 + CCNA_02067 0.35 -1.3
2,219,018 + CCNA_02067 0.35 -1.5
2,219,049 - CCNA_02067 0.40 +0.5
2,219,073 - CCNA_02067 0.44 +1.0
2,219,075 - CCNA_02067 0.44 +0.2
2,219,126 + CCNA_02067 0.53 -1.4
2,219,153 - CCNA_02067 0.57 +0.7
2,219,249 - CCNA_02067 0.73 +0.5
2,219,368 - -0.9
2,219,528 + +0.1
2,219,554 + CCNA_02068 0.12 +0.4
2,219,562 - CCNA_02068 0.14 -1.2
2,219,588 + CCNA_02068 0.21 +0.3
2,219,627 - CCNA_02068 0.32 -0.7
2,219,654 + CCNA_02068 0.40 -0.3
2,219,659 + CCNA_02068 0.42 -0.7
2,219,659 + CCNA_02068 0.42 -1.5
2,219,724 + CCNA_02068 0.60 +0.2

Or see this region's nucleotide sequence