Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01755 and CCNA_01756 are separated by 97 nucleotides CCNA_01756 and CCNA_01757 are separated by 63 nucleotides CCNA_01757 and CCNA_01758 are separated by 44 nucleotides
CCNA_01755: CCNA_01755 - two component sensor histidine kinase, at 1,881,785 to 1,883,437
_01755
CCNA_01756: CCNA_01756 - hypothetical protein, at 1,883,535 to 1,883,654
_01756
CCNA_01757: CCNA_01757 - dimethyladenosine transferase, at 1,883,718 to 1,884,548
_01757
CCNA_01758: CCNA_01758 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 1,884,593 to 1,885,594
_01758
Position (kb)
1883
1884 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1882.567 kb on + strand, within CCNA_01755 at 1882.574 kb on + strand, within CCNA_01755 at 1882.597 kb on - strand, within CCNA_01755 at 1882.608 kb on + strand, within CCNA_01755 at 1882.609 kb on + strand, within CCNA_01755 at 1882.618 kb on - strand, within CCNA_01755 at 1882.697 kb on + strand, within CCNA_01755 at 1882.705 kb on - strand, within CCNA_01755 at 1882.714 kb on + strand, within CCNA_01755 at 1882.715 kb on - strand, within CCNA_01755 at 1882.722 kb on + strand, within CCNA_01755 at 1882.744 kb on - strand, within CCNA_01755 at 1882.791 kb on + strand, within CCNA_01755 at 1882.856 kb on + strand, within CCNA_01755 at 1882.867 kb on + strand, within CCNA_01755 at 1882.875 kb on - strand, within CCNA_01755 at 1882.885 kb on + strand, within CCNA_01755 at 1882.893 kb on - strand, within CCNA_01755 at 1882.911 kb on + strand, within CCNA_01755 at 1882.911 kb on + strand, within CCNA_01755 at 1882.928 kb on + strand, within CCNA_01755 at 1882.979 kb on + strand, within CCNA_01755 at 1883.022 kb on - strand, within CCNA_01755 at 1883.031 kb on + strand, within CCNA_01755 at 1883.044 kb on - strand, within CCNA_01755 at 1883.148 kb on + strand, within CCNA_01755 at 1883.192 kb on - strand, within CCNA_01755 at 1883.216 kb on - strand, within CCNA_01755 at 1883.230 kb on + strand, within CCNA_01755 at 1883.231 kb on + strand, within CCNA_01755 at 1883.234 kb on - strand, within CCNA_01755 at 1883.293 kb on - strand at 1883.303 kb on + strand at 1883.303 kb on - strand at 1883.321 kb on + strand at 1883.362 kb on + strand at 1883.377 kb on - strand at 1883.437 kb on + strand at 1883.445 kb on - strand at 1883.445 kb on - strand at 1883.464 kb on + strand at 1883.568 kb on + strand, within CCNA_01756 at 1883.568 kb on + strand, within CCNA_01756 at 1883.631 kb on + strand, within CCNA_01756 at 1883.634 kb on - strand, within CCNA_01756 at 1883.639 kb on - strand, within CCNA_01756 at 1883.644 kb on - strand at 1883.686 kb on - strand at 1883.707 kb on + strand at 1883.753 kb on + strand at 1883.753 kb on + strand at 1883.761 kb on - strand at 1883.840 kb on - strand, within CCNA_01757 at 1883.963 kb on + strand, within CCNA_01757 at 1884.003 kb on + strand, within CCNA_01757 at 1884.021 kb on - strand, within CCNA_01757 at 1884.021 kb on - strand, within CCNA_01757 at 1884.037 kb on - strand, within CCNA_01757 at 1884.037 kb on - strand, within CCNA_01757 at 1884.138 kb on - strand, within CCNA_01757 at 1884.178 kb on + strand, within CCNA_01757 at 1884.178 kb on + strand, within CCNA_01757 at 1884.366 kb on + strand, within CCNA_01757 at 1884.393 kb on - strand, within CCNA_01757 at 1884.456 kb on - strand, within CCNA_01757 at 1884.471 kb on - strand at 1884.486 kb on - strand at 1884.499 kb on - strand at 1884.542 kb on + strand at 1884.550 kb on - strand at 1884.550 kb on - strand at 1884.556 kb on + strand at 1884.556 kb on + strand at 1884.573 kb on - strand at 1884.590 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 1,882,567 + CCNA_01755 0.47 -1.8 1,882,574 + CCNA_01755 0.48 +0.5 1,882,597 - CCNA_01755 0.49 +0.4 1,882,608 + CCNA_01755 0.50 -0.2 1,882,609 + CCNA_01755 0.50 +1.4 1,882,618 - CCNA_01755 0.50 +0.3 1,882,697 + CCNA_01755 0.55 +0.3 1,882,705 - CCNA_01755 0.56 +0.7 1,882,714 + CCNA_01755 0.56 +0.4 1,882,715 - CCNA_01755 0.56 +0.8 1,882,722 + CCNA_01755 0.57 -1.0 1,882,744 - CCNA_01755 0.58 +0.3 1,882,791 + CCNA_01755 0.61 +0.3 1,882,856 + CCNA_01755 0.65 -1.6 1,882,867 + CCNA_01755 0.65 -0.3 1,882,875 - CCNA_01755 0.66 +0.6 1,882,885 + CCNA_01755 0.67 -0.6 1,882,893 - CCNA_01755 0.67 +0.8 1,882,911 + CCNA_01755 0.68 +0.4 1,882,911 + CCNA_01755 0.68 -0.5 1,882,928 + CCNA_01755 0.69 +0.1 1,882,979 + CCNA_01755 0.72 -0.3 1,883,022 - CCNA_01755 0.75 +0.2 1,883,031 + CCNA_01755 0.75 +0.0 1,883,044 - CCNA_01755 0.76 +0.1 1,883,148 + CCNA_01755 0.82 +0.5 1,883,192 - CCNA_01755 0.85 +0.4 1,883,216 - CCNA_01755 0.87 +0.1 1,883,230 + CCNA_01755 0.87 -0.0 1,883,231 + CCNA_01755 0.87 -0.6 1,883,234 - CCNA_01755 0.88 +0.1 1,883,293 - +0.3 1,883,303 + +0.3 1,883,303 - -0.0 1,883,321 + -0.6 1,883,362 + +1.2 1,883,377 - -0.2 1,883,437 + -0.2 1,883,445 - +0.5 1,883,445 - -0.1 1,883,464 + -0.9 1,883,568 + CCNA_01756 0.28 +2.7 1,883,568 + CCNA_01756 0.28 -0.4 1,883,631 + CCNA_01756 0.80 +0.1 1,883,634 - CCNA_01756 0.82 -0.1 1,883,639 - CCNA_01756 0.87 -0.8 1,883,644 - +0.5 1,883,686 - +0.9 1,883,707 + -0.5 1,883,753 + +1.0 1,883,753 + +0.6 1,883,761 - -0.5 1,883,840 - CCNA_01757 0.15 -0.7 1,883,963 + CCNA_01757 0.29 -0.1 1,884,003 + CCNA_01757 0.34 -1.5 1,884,021 - CCNA_01757 0.36 +1.6 1,884,021 - CCNA_01757 0.36 -1.6 1,884,037 - CCNA_01757 0.38 +0.9 1,884,037 - CCNA_01757 0.38 -0.4 1,884,138 - CCNA_01757 0.51 -2.1 1,884,178 + CCNA_01757 0.55 +0.7 1,884,178 + CCNA_01757 0.55 -0.9 1,884,366 + CCNA_01757 0.78 -0.6 1,884,393 - CCNA_01757 0.81 -2.3 1,884,456 - CCNA_01757 0.89 +0.8 1,884,471 - +0.4 1,884,486 - +1.2 1,884,499 - +0.4 1,884,542 + -1.3 1,884,550 - +0.8 1,884,550 - +0.5 1,884,556 + +0.3 1,884,556 + +1.2 1,884,573 - +0.4 1,884,590 + -0.1
Or see this region's nucleotide sequence