Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01616

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01615 and CCNA_01616 overlap by 4 nucleotidesCCNA_01616 and CCNA_01617 overlap by 1 nucleotidesCCNA_01617 and CCNA_01618 are separated by 47 nucleotides CCNA_01615: CCNA_01615 - cell elongation specific D,D-transpeptidase, at 1,735,967 to 1,737,985 _01615 CCNA_01616: CCNA_01616 - rod shape-determining protein RodA, at 1,737,982 to 1,739,139 _01616 CCNA_01617: CCNA_01617 - acetyltransferase, at 1,739,139 to 1,739,690 _01617 CCNA_01618: CCNA_01618 - uracil-DNA glycosylase, at 1,739,738 to 1,740,415 _01618 Position (kb) 1737 1738 1739 1740Strain fitness (log2 ratio) -1 0 1at 1737.826 kb on + strandat 1737.870 kb on - strandat 1737.935 kb on + strandat 1737.963 kb on - strandat 1737.963 kb on - strandat 1737.974 kb on + strandat 1737.988 kb on - strandat 1737.988 kb on - strandat 1739.115 kb on - strandat 1739.115 kb on - strandat 1739.133 kb on + strandat 1739.133 kb on + strandat 1739.141 kb on - strandat 1739.224 kb on - strand, within CCNA_01617at 1739.242 kb on + strand, within CCNA_01617at 1739.242 kb on + strand, within CCNA_01617at 1739.250 kb on - strand, within CCNA_01617at 1739.266 kb on + strand, within CCNA_01617at 1739.272 kb on + strand, within CCNA_01617at 1739.277 kb on + strand, within CCNA_01617at 1739.314 kb on - strand, within CCNA_01617at 1739.321 kb on - strand, within CCNA_01617at 1739.328 kb on + strand, within CCNA_01617at 1739.334 kb on + strand, within CCNA_01617at 1739.403 kb on - strand, within CCNA_01617at 1739.466 kb on + strand, within CCNA_01617at 1739.466 kb on + strand, within CCNA_01617at 1739.474 kb on - strand, within CCNA_01617at 1739.474 kb on - strand, within CCNA_01617at 1739.474 kb on - strand, within CCNA_01617at 1739.476 kb on + strand, within CCNA_01617at 1739.480 kb on - strand, within CCNA_01617at 1739.560 kb on - strand, within CCNA_01617at 1739.597 kb on + strand, within CCNA_01617at 1739.625 kb on + strand, within CCNA_01617at 1739.652 kb on - strandat 1739.654 kb on - strandat 1739.721 kb on - strandat 1739.743 kb on - strandat 1739.757 kb on - strandat 1739.760 kb on + strandat 1739.760 kb on + strandat 1739.768 kb on - strandat 1739.768 kb on - strandat 1739.768 kb on - strandat 1739.768 kb on - strandat 1739.768 kb on - strandat 1739.768 kb on - strandat 1739.768 kb on - strandat 1739.768 kb on - strandat 1740.076 kb on + strand, within CCNA_01618

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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1,737,826 + -0.8
1,737,870 - -1.3
1,737,935 + -1.5
1,737,963 - -1.6
1,737,963 - +0.7
1,737,974 + +0.9
1,737,988 - -0.3
1,737,988 - -1.7
1,739,115 - -0.3
1,739,115 - -1.5
1,739,133 + +1.0
1,739,133 + +0.4
1,739,141 - -1.2
1,739,224 - CCNA_01617 0.15 +1.6
1,739,242 + CCNA_01617 0.19 +0.6
1,739,242 + CCNA_01617 0.19 +0.5
1,739,250 - CCNA_01617 0.20 -0.3
1,739,266 + CCNA_01617 0.23 +0.2
1,739,272 + CCNA_01617 0.24 +0.0
1,739,277 + CCNA_01617 0.25 -0.2
1,739,314 - CCNA_01617 0.32 -1.0
1,739,321 - CCNA_01617 0.33 -0.4
1,739,328 + CCNA_01617 0.34 -0.5
1,739,334 + CCNA_01617 0.35 +0.4
1,739,403 - CCNA_01617 0.48 +1.7
1,739,466 + CCNA_01617 0.59 +1.7
1,739,466 + CCNA_01617 0.59 +0.1
1,739,474 - CCNA_01617 0.61 -0.5
1,739,474 - CCNA_01617 0.61 -0.1
1,739,474 - CCNA_01617 0.61 +0.4
1,739,476 + CCNA_01617 0.61 +0.8
1,739,480 - CCNA_01617 0.62 +0.5
1,739,560 - CCNA_01617 0.76 -0.2
1,739,597 + CCNA_01617 0.83 +0.3
1,739,625 + CCNA_01617 0.88 -0.7
1,739,652 - -0.3
1,739,654 - +0.6
1,739,721 - +0.9
1,739,743 - +0.6
1,739,757 - +1.5
1,739,760 + +0.4
1,739,760 + +1.1
1,739,768 - +0.4
1,739,768 - +0.5
1,739,768 - +0.2
1,739,768 - +0.8
1,739,768 - +1.7
1,739,768 - +0.5
1,739,768 - -0.3
1,739,768 - -0.3
1,740,076 + CCNA_01618 0.50 +0.7

Or see this region's nucleotide sequence