Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01615 and CCNA_01616 overlap by 4 nucleotides CCNA_01616 and CCNA_01617 overlap by 1 nucleotides CCNA_01617 and CCNA_01618 are separated by 47 nucleotides
CCNA_01615: CCNA_01615 - cell elongation specific D,D-transpeptidase, at 1,735,967 to 1,737,985
_01615
CCNA_01616: CCNA_01616 - rod shape-determining protein RodA, at 1,737,982 to 1,739,139
_01616
CCNA_01617: CCNA_01617 - acetyltransferase, at 1,739,139 to 1,739,690
_01617
CCNA_01618: CCNA_01618 - uracil-DNA glycosylase, at 1,739,738 to 1,740,415
_01618
Position (kb)
1737
1738
1739
1740 Strain fitness (log2 ratio)
-1
0
1 at 1737.826 kb on + strand at 1737.870 kb on - strand at 1737.935 kb on + strand at 1737.963 kb on - strand at 1737.963 kb on - strand at 1737.974 kb on + strand at 1737.988 kb on - strand at 1737.988 kb on - strand at 1739.115 kb on - strand at 1739.115 kb on - strand at 1739.133 kb on + strand at 1739.133 kb on + strand at 1739.141 kb on - strand at 1739.224 kb on - strand, within CCNA_01617 at 1739.242 kb on + strand, within CCNA_01617 at 1739.242 kb on + strand, within CCNA_01617 at 1739.250 kb on - strand, within CCNA_01617 at 1739.266 kb on + strand, within CCNA_01617 at 1739.272 kb on + strand, within CCNA_01617 at 1739.277 kb on + strand, within CCNA_01617 at 1739.314 kb on - strand, within CCNA_01617 at 1739.321 kb on - strand, within CCNA_01617 at 1739.328 kb on + strand, within CCNA_01617 at 1739.334 kb on + strand, within CCNA_01617 at 1739.403 kb on - strand, within CCNA_01617 at 1739.466 kb on + strand, within CCNA_01617 at 1739.466 kb on + strand, within CCNA_01617 at 1739.474 kb on - strand, within CCNA_01617 at 1739.474 kb on - strand, within CCNA_01617 at 1739.474 kb on - strand, within CCNA_01617 at 1739.476 kb on + strand, within CCNA_01617 at 1739.480 kb on - strand, within CCNA_01617 at 1739.560 kb on - strand, within CCNA_01617 at 1739.597 kb on + strand, within CCNA_01617 at 1739.625 kb on + strand, within CCNA_01617 at 1739.652 kb on - strand at 1739.654 kb on - strand at 1739.721 kb on - strand at 1739.743 kb on - strand at 1739.757 kb on - strand at 1739.760 kb on + strand at 1739.760 kb on + strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1739.768 kb on - strand at 1740.076 kb on + strand, within CCNA_01618
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 1,737,826 + -0.8 1,737,870 - -1.3 1,737,935 + -1.5 1,737,963 - -1.6 1,737,963 - +0.7 1,737,974 + +0.9 1,737,988 - -0.3 1,737,988 - -1.7 1,739,115 - -0.3 1,739,115 - -1.5 1,739,133 + +1.0 1,739,133 + +0.4 1,739,141 - -1.2 1,739,224 - CCNA_01617 0.15 +1.6 1,739,242 + CCNA_01617 0.19 +0.6 1,739,242 + CCNA_01617 0.19 +0.5 1,739,250 - CCNA_01617 0.20 -0.3 1,739,266 + CCNA_01617 0.23 +0.2 1,739,272 + CCNA_01617 0.24 +0.0 1,739,277 + CCNA_01617 0.25 -0.2 1,739,314 - CCNA_01617 0.32 -1.0 1,739,321 - CCNA_01617 0.33 -0.4 1,739,328 + CCNA_01617 0.34 -0.5 1,739,334 + CCNA_01617 0.35 +0.4 1,739,403 - CCNA_01617 0.48 +1.7 1,739,466 + CCNA_01617 0.59 +1.7 1,739,466 + CCNA_01617 0.59 +0.1 1,739,474 - CCNA_01617 0.61 -0.5 1,739,474 - CCNA_01617 0.61 -0.1 1,739,474 - CCNA_01617 0.61 +0.4 1,739,476 + CCNA_01617 0.61 +0.8 1,739,480 - CCNA_01617 0.62 +0.5 1,739,560 - CCNA_01617 0.76 -0.2 1,739,597 + CCNA_01617 0.83 +0.3 1,739,625 + CCNA_01617 0.88 -0.7 1,739,652 - -0.3 1,739,654 - +0.6 1,739,721 - +0.9 1,739,743 - +0.6 1,739,757 - +1.5 1,739,760 + +0.4 1,739,760 + +1.1 1,739,768 - +0.4 1,739,768 - +0.5 1,739,768 - +0.2 1,739,768 - +0.8 1,739,768 - +1.7 1,739,768 - +0.5 1,739,768 - -0.3 1,739,768 - -0.3 1,740,076 + CCNA_01618 0.50 +0.7
Or see this region's nucleotide sequence