Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_01381

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01379 and CCNA_01380 are separated by 128 nucleotidesCCNA_01380 and CCNA_01381 are separated by 126 nucleotidesCCNA_01381 and CCNA_01382 are separated by 294 nucleotides CCNA_01379: CCNA_01379 - type I secretion outer membrane protein rsaFb, at 1,493,232 to 1,494,683 _01379 CCNA_01380: CCNA_01380 - pole-organizing protein popZ, at 1,494,812 to 1,495,345 _01380 CCNA_01381: CCNA_01381 - valyl-tRNA synthetase, at 1,495,472 to 1,498,192 _01381 CCNA_01382: CCNA_01382 - long-chain-fatty-acid--CoA ligase, at 1,498,487 to 1,500,238 _01382 Position (kb) 1495 1496 1497 1498 1499Strain fitness (log2 ratio) -1 0 1at 1494.528 kb on - strand, within CCNA_01379at 1494.699 kb on + strandat 1494.717 kb on - strandat 1494.765 kb on + strandat 1495.348 kb on + strandat 1495.410 kb on - strandat 1498.253 kb on - strandat 1498.291 kb on - strandat 1498.361 kb on - strandat 1498.363 kb on + strandat 1498.371 kb on - strandat 1498.431 kb on - strandat 1498.527 kb on + strandat 1498.542 kb on + strandat 1498.547 kb on + strandat 1498.550 kb on - strandat 1498.561 kb on + strandat 1498.561 kb on + strandat 1498.569 kb on - strandat 1498.569 kb on - strandat 1498.569 kb on - strandat 1498.578 kb on + strandat 1498.578 kb on + strandat 1498.609 kb on + strandat 1498.642 kb on + strandat 1498.642 kb on + strandat 1498.708 kb on + strand, within CCNA_01382at 1498.708 kb on + strand, within CCNA_01382at 1498.731 kb on - strand, within CCNA_01382at 1498.744 kb on - strand, within CCNA_01382at 1498.772 kb on + strand, within CCNA_01382at 1498.819 kb on - strand, within CCNA_01382at 1498.852 kb on - strand, within CCNA_01382at 1498.862 kb on - strand, within CCNA_01382at 1498.960 kb on + strand, within CCNA_01382at 1498.976 kb on + strand, within CCNA_01382at 1498.993 kb on + strand, within CCNA_01382at 1498.994 kb on - strand, within CCNA_01382at 1499.080 kb on + strand, within CCNA_01382at 1499.088 kb on - strand, within CCNA_01382at 1499.157 kb on - strand, within CCNA_01382at 1499.157 kb on - strand, within CCNA_01382

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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1,494,528 - CCNA_01379 0.89 -1.0
1,494,699 + -0.4
1,494,717 - -1.3
1,494,765 + +0.3
1,495,348 + +0.2
1,495,410 - +0.2
1,498,253 - +1.1
1,498,291 - +0.2
1,498,361 - +0.1
1,498,363 + +0.7
1,498,371 - -0.5
1,498,431 - +0.1
1,498,527 + -0.4
1,498,542 + +0.9
1,498,547 + -0.0
1,498,550 - +0.3
1,498,561 + +0.5
1,498,561 + -0.7
1,498,569 - +0.2
1,498,569 - -0.5
1,498,569 - -0.4
1,498,578 + +0.0
1,498,578 + +0.4
1,498,609 + +1.3
1,498,642 + +0.5
1,498,642 + +0.7
1,498,708 + CCNA_01382 0.13 +0.1
1,498,708 + CCNA_01382 0.13 -0.1
1,498,731 - CCNA_01382 0.14 -0.1
1,498,744 - CCNA_01382 0.15 +0.6
1,498,772 + CCNA_01382 0.16 +0.7
1,498,819 - CCNA_01382 0.19 -0.3
1,498,852 - CCNA_01382 0.21 +0.1
1,498,862 - CCNA_01382 0.21 +0.6
1,498,960 + CCNA_01382 0.27 +0.3
1,498,976 + CCNA_01382 0.28 -0.0
1,498,993 + CCNA_01382 0.29 +0.1
1,498,994 - CCNA_01382 0.29 +0.5
1,499,080 + CCNA_01382 0.34 +0.3
1,499,088 - CCNA_01382 0.34 -0.0
1,499,157 - CCNA_01382 0.38 -0.8
1,499,157 - CCNA_01382 0.38 +0.1

Or see this region's nucleotide sequence