Strain Fitness in Caulobacter crescentus NA1000 Δfur around CCNA_00802

Experiment: PYE with CHIR-090 4 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00801 and CCNA_00802 are separated by 18 nucleotidesCCNA_00802 and CCNA_00803 are separated by 158 nucleotidesCCNA_00803 and CCNA_00804 are separated by 64 nucleotides CCNA_00801: CCNA_00801 - cytochrome bd-type quinol oxidase, subunit 2 cydB, at 866,406 to 867,557 _00801 CCNA_00802: CCNA_00802 - cyd operon protein YbgT, at 867,576 to 867,695 _00802 CCNA_00803: CCNA_00803 - chemotaxis protein cheW, at 867,854 to 868,309 _00803 CCNA_00804: CCNA_00804 - ASC-1 homology domain protein, at 868,374 to 868,859 _00804 Position (kb) 867 868Strain fitness (log2 ratio) -2 -1 0 1 2at 866.634 kb on + strand, within CCNA_00801at 866.653 kb on - strand, within CCNA_00801at 866.694 kb on - strand, within CCNA_00801at 866.722 kb on + strand, within CCNA_00801at 866.729 kb on - strand, within CCNA_00801at 866.730 kb on - strand, within CCNA_00801at 866.751 kb on - strand, within CCNA_00801at 866.798 kb on - strand, within CCNA_00801at 866.805 kb on + strand, within CCNA_00801at 866.818 kb on + strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.823 kb on + strand, within CCNA_00801at 866.826 kb on - strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.831 kb on - strand, within CCNA_00801at 866.852 kb on + strand, within CCNA_00801at 866.880 kb on + strand, within CCNA_00801at 866.906 kb on + strand, within CCNA_00801at 866.906 kb on + strand, within CCNA_00801at 866.932 kb on - strand, within CCNA_00801at 866.932 kb on - strand, within CCNA_00801at 866.936 kb on + strand, within CCNA_00801at 866.970 kb on + strand, within CCNA_00801at 866.970 kb on + strand, within CCNA_00801at 866.970 kb on + strand, within CCNA_00801at 866.978 kb on - strand, within CCNA_00801at 866.978 kb on - strand, within CCNA_00801at 866.978 kb on - strand, within CCNA_00801at 866.978 kb on - strand, within CCNA_00801at 866.978 kb on - strand, within CCNA_00801at 867.044 kb on + strand, within CCNA_00801at 867.049 kb on + strand, within CCNA_00801at 867.122 kb on - strand, within CCNA_00801at 867.137 kb on + strand, within CCNA_00801at 867.236 kb on - strand, within CCNA_00801at 867.257 kb on - strand, within CCNA_00801at 867.291 kb on + strand, within CCNA_00801at 867.291 kb on + strand, within CCNA_00801at 867.299 kb on - strand, within CCNA_00801at 867.365 kb on + strand, within CCNA_00801at 867.373 kb on - strand, within CCNA_00801at 867.381 kb on - strand, within CCNA_00801at 867.476 kb on + strandat 867.476 kb on + strandat 867.476 kb on + strandat 867.476 kb on + strandat 867.484 kb on - strandat 867.484 kb on - strandat 867.484 kb on - strandat 867.499 kb on - strandat 867.500 kb on + strandat 867.509 kb on - strandat 867.509 kb on - strandat 867.551 kb on + strandat 867.551 kb on + strandat 867.564 kb on - strandat 867.584 kb on - strandat 867.609 kb on - strand, within CCNA_00802at 867.629 kb on + strand, within CCNA_00802at 867.637 kb on - strand, within CCNA_00802at 867.649 kb on + strand, within CCNA_00802at 867.657 kb on - strand, within CCNA_00802at 867.686 kb on - strandat 867.711 kb on + strandat 867.879 kb on + strandat 867.887 kb on - strandat 867.890 kb on + strandat 867.916 kb on + strand, within CCNA_00803at 867.947 kb on + strand, within CCNA_00803at 867.968 kb on - strand, within CCNA_00803at 867.969 kb on + strand, within CCNA_00803at 867.977 kb on - strand, within CCNA_00803at 868.005 kb on + strand, within CCNA_00803at 868.013 kb on - strand, within CCNA_00803at 868.020 kb on + strand, within CCNA_00803at 868.020 kb on + strand, within CCNA_00803at 868.053 kb on + strand, within CCNA_00803at 868.171 kb on + strand, within CCNA_00803at 868.176 kb on + strand, within CCNA_00803at 868.184 kb on - strand, within CCNA_00803at 868.188 kb on + strand, within CCNA_00803at 868.200 kb on + strand, within CCNA_00803at 868.275 kb on + strandat 868.286 kb on + strandat 868.286 kb on + strandat 868.291 kb on + strandat 868.294 kb on - strandat 868.303 kb on + strandat 868.311 kb on - strandat 868.372 kb on + strandat 868.379 kb on - strandat 868.417 kb on + strandat 868.465 kb on + strand, within CCNA_00804at 868.483 kb on + strand, within CCNA_00804at 868.491 kb on - strand, within CCNA_00804at 868.521 kb on + strand, within CCNA_00804at 868.527 kb on + strand, within CCNA_00804at 868.590 kb on - strand, within CCNA_00804at 868.606 kb on + strand, within CCNA_00804at 868.616 kb on + strand, within CCNA_00804at 868.631 kb on + strand, within CCNA_00804at 868.646 kb on - strand, within CCNA_00804at 868.662 kb on - strand, within CCNA_00804at 868.667 kb on - strand, within CCNA_00804at 868.689 kb on - strand, within CCNA_00804

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL
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866,634 + CCNA_00801 0.20 +1.8
866,653 - CCNA_00801 0.21 -1.5
866,694 - CCNA_00801 0.25 +1.0
866,722 + CCNA_00801 0.27 -0.0
866,729 - CCNA_00801 0.28 +0.2
866,730 - CCNA_00801 0.28 -0.8
866,751 - CCNA_00801 0.30 +1.6
866,798 - CCNA_00801 0.34 -1.0
866,805 + CCNA_00801 0.35 +0.0
866,818 + CCNA_00801 0.36 -0.2
866,823 + CCNA_00801 0.36 -0.8
866,823 + CCNA_00801 0.36 +0.5
866,823 + CCNA_00801 0.36 +0.3
866,823 + CCNA_00801 0.36 +0.5
866,826 - CCNA_00801 0.36 -0.7
866,831 - CCNA_00801 0.37 +1.6
866,831 - CCNA_00801 0.37 +0.4
866,831 - CCNA_00801 0.37 +1.2
866,831 - CCNA_00801 0.37 -0.2
866,831 - CCNA_00801 0.37 -0.1
866,852 + CCNA_00801 0.39 +1.2
866,880 + CCNA_00801 0.41 -0.1
866,906 + CCNA_00801 0.43 +0.3
866,906 + CCNA_00801 0.43 +0.7
866,932 - CCNA_00801 0.46 +1.8
866,932 - CCNA_00801 0.46 -1.5
866,936 + CCNA_00801 0.46 +0.4
866,970 + CCNA_00801 0.49 +0.6
866,970 + CCNA_00801 0.49 -0.0
866,970 + CCNA_00801 0.49 +0.6
866,978 - CCNA_00801 0.50 -2.0
866,978 - CCNA_00801 0.50 -0.3
866,978 - CCNA_00801 0.50 -0.0
866,978 - CCNA_00801 0.50 +0.3
866,978 - CCNA_00801 0.50 +0.8
867,044 + CCNA_00801 0.55 +0.6
867,049 + CCNA_00801 0.56 +0.4
867,122 - CCNA_00801 0.62 +0.5
867,137 + CCNA_00801 0.63 -0.8
867,236 - CCNA_00801 0.72 -0.5
867,257 - CCNA_00801 0.74 +1.0
867,291 + CCNA_00801 0.77 -1.8
867,291 + CCNA_00801 0.77 +0.4
867,299 - CCNA_00801 0.78 -0.0
867,365 + CCNA_00801 0.83 +0.9
867,373 - CCNA_00801 0.84 +0.4
867,381 - CCNA_00801 0.85 -0.1
867,476 + +0.5
867,476 + +1.0
867,476 + -0.2
867,476 + -0.3
867,484 - -2.1
867,484 - -0.9
867,484 - -1.0
867,499 - +0.3
867,500 + +0.6
867,509 - -0.6
867,509 - +0.3
867,551 + -0.2
867,551 + +0.3
867,564 - -0.8
867,584 - +0.7
867,609 - CCNA_00802 0.28 -1.6
867,629 + CCNA_00802 0.44 -0.2
867,637 - CCNA_00802 0.51 -1.5
867,649 + CCNA_00802 0.61 +0.1
867,657 - CCNA_00802 0.68 -1.4
867,686 - -0.2
867,711 + +0.4
867,879 + +0.6
867,887 - +1.1
867,890 + +0.9
867,916 + CCNA_00803 0.14 +0.4
867,947 + CCNA_00803 0.20 +0.7
867,968 - CCNA_00803 0.25 -0.6
867,969 + CCNA_00803 0.25 -0.4
867,977 - CCNA_00803 0.27 -0.7
868,005 + CCNA_00803 0.33 +0.3
868,013 - CCNA_00803 0.35 -1.7
868,020 + CCNA_00803 0.36 +0.2
868,020 + CCNA_00803 0.36 +0.4
868,053 + CCNA_00803 0.44 -0.4
868,171 + CCNA_00803 0.70 +0.6
868,176 + CCNA_00803 0.71 +1.0
868,184 - CCNA_00803 0.72 +0.6
868,188 + CCNA_00803 0.73 +0.2
868,200 + CCNA_00803 0.76 +0.1
868,275 + -0.3
868,286 + +0.4
868,286 + -0.5
868,291 + +0.6
868,294 - -0.5
868,303 + +0.4
868,311 - +1.3
868,372 + +0.0
868,379 - +0.4
868,417 + +0.1
868,465 + CCNA_00804 0.19 +0.4
868,483 + CCNA_00804 0.22 -0.4
868,491 - CCNA_00804 0.24 +0.5
868,521 + CCNA_00804 0.30 -0.1
868,527 + CCNA_00804 0.31 -0.4
868,590 - CCNA_00804 0.44 +0.6
868,606 + CCNA_00804 0.48 +0.7
868,616 + CCNA_00804 0.50 -0.4
868,631 + CCNA_00804 0.53 -1.7
868,646 - CCNA_00804 0.56 -0.3
868,662 - CCNA_00804 0.59 -0.1
868,667 - CCNA_00804 0.60 -0.6
868,689 - CCNA_00804 0.65 +0.1

Or see this region's nucleotide sequence