Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00776 and CCNA_00777 are separated by 113 nucleotides CCNA_00777 and CCNA_00778 are separated by 159 nucleotides
CCNA_00776: CCNA_00776 - OAR protein precursor, at 831,686 to 835,249
_00776
CCNA_00777: CCNA_00777 - PAS family GGDEF/EAL protein, at 835,363 to 837,786
_00777
CCNA_00778: CCNA_00778 - GTP-binding protein TypA/BipA, at 837,946 to 839,778
_00778
Position (kb) 835
836
837
838 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 834.376 kb on - strand, within CCNA_00776 at 834.441 kb on - strand, within CCNA_00776 at 834.441 kb on - strand, within CCNA_00776 at 834.441 kb on - strand, within CCNA_00776 at 834.458 kb on - strand, within CCNA_00776 at 834.503 kb on - strand, within CCNA_00776 at 834.565 kb on + strand, within CCNA_00776 at 834.565 kb on + strand, within CCNA_00776 at 834.573 kb on - strand, within CCNA_00776 at 834.622 kb on + strand, within CCNA_00776 at 834.687 kb on + strand, within CCNA_00776 at 834.739 kb on - strand, within CCNA_00776 at 834.740 kb on + strand, within CCNA_00776 at 834.803 kb on - strand, within CCNA_00776 at 834.812 kb on + strand, within CCNA_00776 at 834.812 kb on + strand, within CCNA_00776 at 834.812 kb on + strand, within CCNA_00776 at 834.812 kb on + strand, within CCNA_00776 at 834.812 kb on + strand, within CCNA_00776 at 834.820 kb on - strand, within CCNA_00776 at 834.820 kb on - strand, within CCNA_00776 at 834.820 kb on - strand, within CCNA_00776 at 834.820 kb on - strand, within CCNA_00776 at 834.820 kb on - strand, within CCNA_00776 at 834.820 kb on - strand, within CCNA_00776 at 834.913 kb on - strand at 834.950 kb on - strand at 834.977 kb on + strand at 834.977 kb on + strand at 834.977 kb on + strand at 834.977 kb on + strand at 834.977 kb on + strand at 834.977 kb on + strand at 834.977 kb on + strand at 834.985 kb on - strand at 834.985 kb on - strand at 834.985 kb on - strand at 834.985 kb on - strand at 834.985 kb on - strand at 834.985 kb on - strand at 834.985 kb on - strand at 834.985 kb on - strand at 835.030 kb on + strand at 835.038 kb on - strand at 835.075 kb on + strand at 835.087 kb on - strand at 835.089 kb on - strand at 835.207 kb on - strand at 835.207 kb on - strand at 835.296 kb on - strand at 835.333 kb on + strand at 835.341 kb on - strand at 835.341 kb on - strand at 835.344 kb on + strand at 835.354 kb on + strand at 835.362 kb on - strand at 835.461 kb on - strand at 835.489 kb on + strand at 835.496 kb on + strand at 835.496 kb on + strand at 835.496 kb on + strand at 835.496 kb on + strand at 835.501 kb on + strand at 835.504 kb on - strand at 835.504 kb on - strand at 835.529 kb on + strand at 835.533 kb on - strand at 835.577 kb on - strand at 835.589 kb on - strand at 835.604 kb on - strand at 835.664 kb on + strand, within CCNA_00777 at 835.664 kb on + strand, within CCNA_00777 at 835.664 kb on + strand, within CCNA_00777 at 835.672 kb on - strand, within CCNA_00777 at 835.672 kb on - strand, within CCNA_00777 at 835.672 kb on - strand, within CCNA_00777 at 835.682 kb on - strand, within CCNA_00777 at 835.773 kb on + strand, within CCNA_00777 at 835.773 kb on + strand, within CCNA_00777 at 835.781 kb on - strand, within CCNA_00777 at 835.792 kb on + strand, within CCNA_00777 at 835.800 kb on - strand, within CCNA_00777 at 835.806 kb on + strand, within CCNA_00777 at 835.827 kb on - strand, within CCNA_00777 at 835.853 kb on - strand, within CCNA_00777 at 835.861 kb on - strand, within CCNA_00777 at 835.863 kb on - strand, within CCNA_00777 at 835.873 kb on - strand, within CCNA_00777 at 835.873 kb on - strand, within CCNA_00777 at 835.873 kb on - strand, within CCNA_00777 at 835.902 kb on + strand, within CCNA_00777 at 836.004 kb on - strand, within CCNA_00777 at 836.005 kb on + strand, within CCNA_00777 at 836.008 kb on + strand, within CCNA_00777 at 836.018 kb on - strand, within CCNA_00777 at 836.068 kb on + strand, within CCNA_00777 at 836.141 kb on - strand, within CCNA_00777 at 836.149 kb on + strand, within CCNA_00777 at 836.149 kb on + strand, within CCNA_00777 at 836.157 kb on - strand, within CCNA_00777 at 836.157 kb on - strand, within CCNA_00777 at 836.191 kb on - strand, within CCNA_00777 at 836.195 kb on + strand, within CCNA_00777 at 836.203 kb on - strand, within CCNA_00777 at 836.210 kb on - strand, within CCNA_00777 at 836.252 kb on + strand, within CCNA_00777 at 836.257 kb on + strand, within CCNA_00777 at 836.268 kb on + strand, within CCNA_00777 at 836.273 kb on + strand, within CCNA_00777 at 836.281 kb on - strand, within CCNA_00777 at 836.326 kb on + strand, within CCNA_00777 at 836.341 kb on + strand, within CCNA_00777 at 836.341 kb on + strand, within CCNA_00777 at 836.391 kb on - strand, within CCNA_00777 at 836.391 kb on - strand, within CCNA_00777 at 836.436 kb on - strand, within CCNA_00777 at 836.512 kb on + strand, within CCNA_00777 at 836.536 kb on - strand, within CCNA_00777 at 836.542 kb on - strand, within CCNA_00777 at 836.558 kb on - strand, within CCNA_00777 at 836.560 kb on + strand, within CCNA_00777 at 836.569 kb on - strand, within CCNA_00777 at 836.570 kb on + strand, within CCNA_00777 at 836.570 kb on + strand, within CCNA_00777 at 836.570 kb on + strand, within CCNA_00777 at 836.570 kb on + strand, within CCNA_00777 at 836.570 kb on + strand, within CCNA_00777 at 836.578 kb on - strand, within CCNA_00777 at 836.578 kb on - strand, within CCNA_00777 at 836.578 kb on - strand, within CCNA_00777 at 836.578 kb on - strand, within CCNA_00777 at 836.578 kb on - strand, within CCNA_00777 at 836.578 kb on - strand, within CCNA_00777 at 836.588 kb on - strand, within CCNA_00777 at 836.593 kb on + strand, within CCNA_00777 at 836.598 kb on + strand, within CCNA_00777 at 836.601 kb on - strand, within CCNA_00777 at 836.608 kb on + strand, within CCNA_00777 at 836.608 kb on + strand, within CCNA_00777 at 836.608 kb on + strand, within CCNA_00777 at 836.615 kb on + strand, within CCNA_00777 at 836.616 kb on - strand, within CCNA_00777 at 836.626 kb on + strand, within CCNA_00777 at 836.642 kb on + strand, within CCNA_00777 at 836.644 kb on - strand, within CCNA_00777 at 836.644 kb on - strand, within CCNA_00777 at 836.653 kb on + strand, within CCNA_00777 at 836.680 kb on - strand, within CCNA_00777 at 836.694 kb on - strand, within CCNA_00777 at 836.694 kb on - strand, within CCNA_00777 at 836.799 kb on - strand, within CCNA_00777 at 836.827 kb on - strand, within CCNA_00777 at 836.874 kb on - strand, within CCNA_00777 at 836.955 kb on + strand, within CCNA_00777 at 836.963 kb on - strand, within CCNA_00777 at 837.036 kb on - strand, within CCNA_00777 at 837.054 kb on + strand, within CCNA_00777 at 837.074 kb on - strand, within CCNA_00777 at 837.093 kb on + strand, within CCNA_00777 at 837.152 kb on + strand, within CCNA_00777 at 837.174 kb on + strand, within CCNA_00777 at 837.231 kb on - strand, within CCNA_00777 at 837.239 kb on - strand, within CCNA_00777 at 837.254 kb on + strand, within CCNA_00777 at 837.269 kb on + strand, within CCNA_00777 at 837.269 kb on + strand, within CCNA_00777 at 837.276 kb on - strand, within CCNA_00777 at 837.290 kb on - strand, within CCNA_00777 at 837.312 kb on + strand, within CCNA_00777 at 837.313 kb on + strand, within CCNA_00777 at 837.313 kb on + strand, within CCNA_00777 at 837.376 kb on - strand, within CCNA_00777 at 837.388 kb on - strand, within CCNA_00777 at 837.393 kb on - strand, within CCNA_00777 at 837.411 kb on - strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.422 kb on + strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.430 kb on - strand, within CCNA_00777 at 837.448 kb on + strand, within CCNA_00777 at 837.453 kb on + strand, within CCNA_00777 at 837.462 kb on + strand, within CCNA_00777 at 837.516 kb on + strand, within CCNA_00777 at 837.571 kb on - strand at 837.586 kb on + strand at 837.595 kb on + strand at 837.651 kb on - strand at 837.670 kb on + strand at 837.679 kb on - strand at 837.679 kb on - strand at 837.679 kb on - strand at 837.684 kb on - strand at 837.714 kb on - strand at 837.742 kb on - strand at 837.792 kb on + strand at 837.792 kb on + strand at 837.792 kb on + strand at 837.792 kb on + strand at 837.800 kb on - strand at 837.802 kb on - strand at 837.847 kb on + strand at 837.855 kb on - strand at 837.943 kb on + strand at 837.952 kb on - strand at 837.982 kb on + strand at 837.990 kb on - strand at 838.052 kb on + strand at 838.062 kb on + strand at 838.070 kb on + strand at 838.095 kb on - strand at 838.166 kb on - strand, within CCNA_00778 at 838.215 kb on + strand, within CCNA_00778 at 838.253 kb on - strand, within CCNA_00778 at 838.304 kb on + strand, within CCNA_00778 at 838.304 kb on + strand, within CCNA_00778 at 838.304 kb on + strand, within CCNA_00778 at 838.312 kb on - strand, within CCNA_00778 at 838.338 kb on + strand, within CCNA_00778 at 838.368 kb on - strand, within CCNA_00778 at 838.378 kb on - strand, within CCNA_00778 at 838.427 kb on + strand, within CCNA_00778 at 838.455 kb on - strand, within CCNA_00778 at 838.477 kb on - strand, within CCNA_00778 at 838.484 kb on - strand, within CCNA_00778 at 838.485 kb on - strand, within CCNA_00778 at 838.487 kb on + strand, within CCNA_00778 at 838.487 kb on + strand, within CCNA_00778 at 838.562 kb on + strand, within CCNA_00778 at 838.571 kb on - strand, within CCNA_00778 at 838.597 kb on - strand, within CCNA_00778 at 838.623 kb on + strand, within CCNA_00778 at 838.704 kb on + strand, within CCNA_00778
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 834,376 - CCNA_00776 0.75 -0.2 834,441 - CCNA_00776 0.77 +1.6 834,441 - CCNA_00776 0.77 -0.0 834,441 - CCNA_00776 0.77 -0.8 834,458 - CCNA_00776 0.78 -0.3 834,503 - CCNA_00776 0.79 -0.1 834,565 + CCNA_00776 0.81 +1.3 834,565 + CCNA_00776 0.81 -0.6 834,573 - CCNA_00776 0.81 +0.6 834,622 + CCNA_00776 0.82 -0.8 834,687 + CCNA_00776 0.84 -0.6 834,739 - CCNA_00776 0.86 -0.0 834,740 + CCNA_00776 0.86 -1.2 834,803 - CCNA_00776 0.87 +0.1 834,812 + CCNA_00776 0.88 +1.0 834,812 + CCNA_00776 0.88 +0.3 834,812 + CCNA_00776 0.88 +1.1 834,812 + CCNA_00776 0.88 +0.1 834,812 + CCNA_00776 0.88 -1.7 834,820 - CCNA_00776 0.88 -0.2 834,820 - CCNA_00776 0.88 +0.1 834,820 - CCNA_00776 0.88 +0.0 834,820 - CCNA_00776 0.88 -0.4 834,820 - CCNA_00776 0.88 -0.7 834,820 - CCNA_00776 0.88 -0.4 834,913 - -0.2 834,950 - -1.1 834,977 + +0.2 834,977 + +0.1 834,977 + +0.2 834,977 + -0.4 834,977 + -0.2 834,977 + -0.3 834,977 + +0.3 834,985 - -0.0 834,985 - +1.0 834,985 - +0.4 834,985 - +0.5 834,985 - +0.2 834,985 - -0.3 834,985 - -1.4 834,985 - +1.4 835,030 + -0.4 835,038 - -0.0 835,075 + -1.6 835,087 - -0.0 835,089 - -1.5 835,207 - +1.4 835,207 - -0.4 835,296 - -1.0 835,333 + -2.5 835,341 - +0.9 835,341 - -0.5 835,344 + -0.2 835,354 + +0.4 835,362 - +0.8 835,461 - -0.2 835,489 + -0.2 835,496 + -0.4 835,496 + -1.6 835,496 + -0.3 835,496 + -0.6 835,501 + +1.1 835,504 - -0.3 835,504 - -0.6 835,529 + -0.1 835,533 - +0.3 835,577 - +0.4 835,589 - +0.8 835,604 - +0.4 835,664 + CCNA_00777 0.12 -1.0 835,664 + CCNA_00777 0.12 -0.6 835,664 + CCNA_00777 0.12 +0.1 835,672 - CCNA_00777 0.13 -0.6 835,672 - CCNA_00777 0.13 +0.1 835,672 - CCNA_00777 0.13 +0.2 835,682 - CCNA_00777 0.13 -0.6 835,773 + CCNA_00777 0.17 -0.3 835,773 + CCNA_00777 0.17 -0.5 835,781 - CCNA_00777 0.17 +1.8 835,792 + CCNA_00777 0.18 -0.3 835,800 - CCNA_00777 0.18 +0.1 835,806 + CCNA_00777 0.18 -0.0 835,827 - CCNA_00777 0.19 +0.6 835,853 - CCNA_00777 0.20 -0.0 835,861 - CCNA_00777 0.21 +0.1 835,863 - CCNA_00777 0.21 -0.1 835,873 - CCNA_00777 0.21 +0.1 835,873 - CCNA_00777 0.21 -1.2 835,873 - CCNA_00777 0.21 +1.4 835,902 + CCNA_00777 0.22 +0.1 836,004 - CCNA_00777 0.26 +0.6 836,005 + CCNA_00777 0.26 +1.0 836,008 + CCNA_00777 0.27 +0.1 836,018 - CCNA_00777 0.27 -0.1 836,068 + CCNA_00777 0.29 -0.6 836,141 - CCNA_00777 0.32 +0.5 836,149 + CCNA_00777 0.32 -0.9 836,149 + CCNA_00777 0.32 -0.7 836,157 - CCNA_00777 0.33 -1.7 836,157 - CCNA_00777 0.33 +0.8 836,191 - CCNA_00777 0.34 +0.2 836,195 + CCNA_00777 0.34 +0.4 836,203 - CCNA_00777 0.35 +1.2 836,210 - CCNA_00777 0.35 +0.8 836,252 + CCNA_00777 0.37 +0.6 836,257 + CCNA_00777 0.37 +0.7 836,268 + CCNA_00777 0.37 +0.2 836,273 + CCNA_00777 0.38 +0.3 836,281 - CCNA_00777 0.38 +0.1 836,326 + CCNA_00777 0.40 -0.3 836,341 + CCNA_00777 0.40 +0.3 836,341 + CCNA_00777 0.40 +0.6 836,391 - CCNA_00777 0.42 +0.3 836,391 - CCNA_00777 0.42 +0.6 836,436 - CCNA_00777 0.44 +0.1 836,512 + CCNA_00777 0.47 -0.1 836,536 - CCNA_00777 0.48 +0.5 836,542 - CCNA_00777 0.49 +0.3 836,558 - CCNA_00777 0.49 -0.4 836,560 + CCNA_00777 0.49 -0.7 836,569 - CCNA_00777 0.50 -0.6 836,570 + CCNA_00777 0.50 +0.2 836,570 + CCNA_00777 0.50 +0.4 836,570 + CCNA_00777 0.50 +0.2 836,570 + CCNA_00777 0.50 -0.1 836,570 + CCNA_00777 0.50 +0.3 836,578 - CCNA_00777 0.50 -0.5 836,578 - CCNA_00777 0.50 +0.2 836,578 - CCNA_00777 0.50 -0.2 836,578 - CCNA_00777 0.50 +0.6 836,578 - CCNA_00777 0.50 -0.0 836,578 - CCNA_00777 0.50 -2.3 836,588 - CCNA_00777 0.51 -0.3 836,593 + CCNA_00777 0.51 -0.9 836,598 + CCNA_00777 0.51 +0.2 836,601 - CCNA_00777 0.51 +1.2 836,608 + CCNA_00777 0.51 -0.9 836,608 + CCNA_00777 0.51 -1.2 836,608 + CCNA_00777 0.51 +0.0 836,615 + CCNA_00777 0.52 -1.8 836,616 - CCNA_00777 0.52 +1.0 836,626 + CCNA_00777 0.52 -0.3 836,642 + CCNA_00777 0.53 +0.7 836,644 - CCNA_00777 0.53 +0.3 836,644 - CCNA_00777 0.53 +0.4 836,653 + CCNA_00777 0.53 -0.8 836,680 - CCNA_00777 0.54 +0.3 836,694 - CCNA_00777 0.55 +0.7 836,694 - CCNA_00777 0.55 +0.2 836,799 - CCNA_00777 0.59 -0.2 836,827 - CCNA_00777 0.60 -1.3 836,874 - CCNA_00777 0.62 -0.2 836,955 + CCNA_00777 0.66 -0.0 836,963 - CCNA_00777 0.66 +1.4 837,036 - CCNA_00777 0.69 +0.2 837,054 + CCNA_00777 0.70 +0.3 837,074 - CCNA_00777 0.71 +0.6 837,093 + CCNA_00777 0.71 +1.2 837,152 + CCNA_00777 0.74 -0.4 837,174 + CCNA_00777 0.75 +0.9 837,231 - CCNA_00777 0.77 +0.8 837,239 - CCNA_00777 0.77 +0.5 837,254 + CCNA_00777 0.78 +0.1 837,269 + CCNA_00777 0.79 +0.7 837,269 + CCNA_00777 0.79 -0.4 837,276 - CCNA_00777 0.79 -0.1 837,290 - CCNA_00777 0.79 +0.1 837,312 + CCNA_00777 0.80 +0.5 837,313 + CCNA_00777 0.80 +2.0 837,313 + CCNA_00777 0.80 -0.7 837,376 - CCNA_00777 0.83 +0.2 837,388 - CCNA_00777 0.84 +0.0 837,393 - CCNA_00777 0.84 +0.3 837,411 - CCNA_00777 0.84 +0.0 837,422 + CCNA_00777 0.85 -0.1 837,422 + CCNA_00777 0.85 -1.1 837,422 + CCNA_00777 0.85 -0.6 837,422 + CCNA_00777 0.85 +0.0 837,422 + CCNA_00777 0.85 -0.4 837,422 + CCNA_00777 0.85 +0.6 837,422 + CCNA_00777 0.85 -0.5 837,422 + CCNA_00777 0.85 -0.2 837,422 + CCNA_00777 0.85 +0.1 837,422 + CCNA_00777 0.85 -1.3 837,422 + CCNA_00777 0.85 +0.6 837,430 - CCNA_00777 0.85 +0.2 837,430 - CCNA_00777 0.85 +0.2 837,430 - CCNA_00777 0.85 +0.2 837,430 - CCNA_00777 0.85 -0.0 837,448 + CCNA_00777 0.86 -0.8 837,453 + CCNA_00777 0.86 +0.7 837,462 + CCNA_00777 0.87 -0.9 837,516 + CCNA_00777 0.89 -1.9 837,571 - +0.7 837,586 + -1.7 837,595 + +0.6 837,651 - +0.4 837,670 + -1.0 837,679 - +0.7 837,679 - +0.3 837,679 - +0.1 837,684 - -0.2 837,714 - +0.9 837,742 - -0.4 837,792 + -0.1 837,792 + +0.5 837,792 + +0.8 837,792 + +0.1 837,800 - +0.1 837,802 - +0.6 837,847 + -1.2 837,855 - +0.2 837,943 + -0.4 837,952 - +0.6 837,982 + +0.0 837,990 - -0.0 838,052 + -2.2 838,062 + +1.1 838,070 + -0.7 838,095 - -0.7 838,166 - CCNA_00778 0.12 -0.7 838,215 + CCNA_00778 0.15 -1.0 838,253 - CCNA_00778 0.17 -0.4 838,304 + CCNA_00778 0.20 -1.1 838,304 + CCNA_00778 0.20 -0.7 838,304 + CCNA_00778 0.20 +0.7 838,312 - CCNA_00778 0.20 -0.2 838,338 + CCNA_00778 0.21 -0.2 838,368 - CCNA_00778 0.23 +0.3 838,378 - CCNA_00778 0.24 -0.2 838,427 + CCNA_00778 0.26 -1.0 838,455 - CCNA_00778 0.28 +1.0 838,477 - CCNA_00778 0.29 -0.2 838,484 - CCNA_00778 0.29 -0.0 838,485 - CCNA_00778 0.29 +0.1 838,487 + CCNA_00778 0.30 -2.3 838,487 + CCNA_00778 0.30 +0.5 838,562 + CCNA_00778 0.34 +1.6 838,571 - CCNA_00778 0.34 +1.7 838,597 - CCNA_00778 0.36 -0.1 838,623 + CCNA_00778 0.37 -2.9 838,704 + CCNA_00778 0.41 +0.3
Or see this region's nucleotide sequence