Experiment: PYE with CHIR-090 4 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00679 and CCNA_00680 are separated by 132 nucleotides CCNA_00680 and CCNA_00681 overlap by 4 nucleotides CCNA_00681 and CCNA_00682 are separated by 94 nucleotides CCNA_00682 and CCNA_00683 are separated by 396 nucleotides
CCNA_00679: CCNA_00679 - transposase, IS116/IS110/IS902 family, at 735,544 to 736,479
_00679
CCNA_00680: CCNA_00680 - 2-hydroxychromene-2-carboxylate isomerase, at 736,612 to 737,247
_00680
CCNA_00681: CCNA_00681 - short chain dehydrogenase, at 737,244 to 737,981
_00681
CCNA_00682: CCNA_00682 - MarR-family transcriptional regulator, at 738,076 to 738,534
_00682
CCNA_00683: CCNA_00683 - Deoxyribodipyrimidine photo-lyase-related protein, at 738,931 to 740,460
_00683
Position (kb) 737
738 Strain fitness (log2 ratio) -2
-1
0
1
2 at 736.489 kb on + strand at 736.499 kb on + strand at 736.499 kb on + strand at 736.499 kb on + strand at 736.499 kb on + strand at 736.499 kb on + strand at 736.512 kb on + strand at 736.544 kb on - strand at 736.559 kb on - strand at 736.564 kb on - strand at 736.564 kb on - strand at 736.568 kb on + strand at 736.577 kb on - strand at 736.584 kb on - strand at 736.588 kb on + strand at 736.602 kb on - strand at 736.621 kb on + strand at 736.639 kb on - strand at 736.639 kb on - strand at 736.644 kb on - strand at 736.668 kb on + strand at 736.727 kb on + strand, within CCNA_00680 at 736.743 kb on - strand, within CCNA_00680 at 736.748 kb on - strand, within CCNA_00680 at 736.753 kb on - strand, within CCNA_00680 at 736.753 kb on - strand, within CCNA_00680 at 736.753 kb on - strand, within CCNA_00680 at 736.753 kb on - strand, within CCNA_00680 at 736.753 kb on - strand, within CCNA_00680 at 736.753 kb on - strand, within CCNA_00680 at 736.797 kb on - strand, within CCNA_00680 at 736.824 kb on + strand, within CCNA_00680 at 736.832 kb on - strand, within CCNA_00680 at 736.858 kb on - strand, within CCNA_00680 at 736.862 kb on + strand, within CCNA_00680 at 736.862 kb on + strand, within CCNA_00680 at 736.864 kb on + strand, within CCNA_00680 at 736.883 kb on - strand, within CCNA_00680 at 736.883 kb on - strand, within CCNA_00680 at 736.885 kb on + strand, within CCNA_00680 at 736.905 kb on + strand, within CCNA_00680 at 737.008 kb on + strand, within CCNA_00680 at 737.008 kb on + strand, within CCNA_00680 at 737.034 kb on + strand, within CCNA_00680 at 737.078 kb on + strand, within CCNA_00680 at 737.092 kb on + strand, within CCNA_00680 at 737.172 kb on + strand, within CCNA_00680 at 737.179 kb on - strand, within CCNA_00680 at 737.215 kb on - strand at 737.239 kb on + strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.276 kb on + strand at 737.278 kb on - strand at 737.278 kb on - strand at 737.278 kb on - strand at 737.278 kb on - strand at 737.278 kb on - strand at 737.283 kb on + strand at 737.283 kb on + strand at 737.283 kb on + strand at 737.297 kb on - strand at 737.312 kb on + strand at 737.317 kb on + strand at 737.320 kb on - strand, within CCNA_00681 at 737.349 kb on + strand, within CCNA_00681 at 737.349 kb on - strand, within CCNA_00681 at 737.360 kb on + strand, within CCNA_00681 at 737.377 kb on + strand, within CCNA_00681 at 737.379 kb on - strand, within CCNA_00681 at 737.397 kb on + strand, within CCNA_00681 at 737.397 kb on + strand, within CCNA_00681 at 737.397 kb on + strand, within CCNA_00681 at 737.397 kb on + strand, within CCNA_00681 at 737.405 kb on - strand, within CCNA_00681 at 737.440 kb on - strand, within CCNA_00681 at 737.476 kb on + strand, within CCNA_00681 at 737.484 kb on - strand, within CCNA_00681 at 737.488 kb on - strand, within CCNA_00681 at 737.501 kb on + strand, within CCNA_00681 at 737.551 kb on - strand, within CCNA_00681 at 737.565 kb on - strand, within CCNA_00681 at 737.570 kb on - strand, within CCNA_00681 at 737.570 kb on - strand, within CCNA_00681 at 737.572 kb on - strand, within CCNA_00681 at 737.584 kb on + strand, within CCNA_00681 at 737.643 kb on + strand, within CCNA_00681 at 737.643 kb on + strand, within CCNA_00681 at 737.661 kb on + strand, within CCNA_00681 at 737.661 kb on + strand, within CCNA_00681 at 737.692 kb on - strand, within CCNA_00681 at 737.692 kb on - strand, within CCNA_00681 at 737.715 kb on - strand, within CCNA_00681 at 737.770 kb on - strand, within CCNA_00681 at 737.770 kb on - strand, within CCNA_00681 at 737.811 kb on + strand, within CCNA_00681 at 737.811 kb on + strand, within CCNA_00681 at 737.811 kb on + strand, within CCNA_00681 at 737.811 kb on + strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.853 kb on - strand, within CCNA_00681 at 737.853 kb on - strand, within CCNA_00681 at 737.876 kb on + strand, within CCNA_00681 at 737.888 kb on + strand, within CCNA_00681 at 737.888 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.895 kb on + strand, within CCNA_00681 at 737.896 kb on - strand, within CCNA_00681 at 737.896 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.903 kb on - strand, within CCNA_00681 at 737.905 kb on + strand, within CCNA_00681 at 737.905 kb on + strand, within CCNA_00681 at 737.918 kb on - strand at 737.918 kb on - strand at 737.918 kb on - strand at 737.918 kb on - strand at 737.947 kb on + strand at 737.951 kb on + strand at 737.959 kb on - strand at 737.959 kb on - strand at 737.965 kb on + strand at 738.055 kb on - strand at 738.062 kb on + strand at 738.062 kb on - strand at 738.081 kb on + strand at 738.091 kb on - strand at 738.102 kb on + strand at 738.103 kb on - strand at 738.110 kb on - strand at 738.148 kb on + strand, within CCNA_00682 at 738.181 kb on + strand, within CCNA_00682 at 738.189 kb on + strand, within CCNA_00682 at 738.196 kb on - strand, within CCNA_00682 at 738.196 kb on - strand, within CCNA_00682 at 738.263 kb on - strand, within CCNA_00682 at 738.291 kb on + strand, within CCNA_00682 at 738.311 kb on + strand, within CCNA_00682 at 738.311 kb on + strand, within CCNA_00682 at 738.311 kb on + strand, within CCNA_00682 at 738.317 kb on + strand, within CCNA_00682 at 738.319 kb on - strand, within CCNA_00682 at 738.319 kb on - strand, within CCNA_00682 at 738.340 kb on - strand, within CCNA_00682 at 738.351 kb on + strand, within CCNA_00682 at 738.386 kb on - strand, within CCNA_00682 at 738.423 kb on - strand, within CCNA_00682 at 738.427 kb on + strand, within CCNA_00682 at 738.435 kb on - strand, within CCNA_00682 at 738.449 kb on - strand, within CCNA_00682 at 738.449 kb on - strand, within CCNA_00682 at 738.451 kb on + strand, within CCNA_00682 at 738.451 kb on + strand, within CCNA_00682 at 738.456 kb on + strand, within CCNA_00682 at 738.459 kb on - strand, within CCNA_00682 at 738.459 kb on - strand, within CCNA_00682 at 738.459 kb on - strand, within CCNA_00682 at 738.459 kb on - strand, within CCNA_00682 at 738.459 kb on - strand, within CCNA_00682 at 738.459 kb on - strand, within CCNA_00682 at 738.459 kb on - strand, within CCNA_00682 at 738.461 kb on + strand, within CCNA_00682 at 738.493 kb on - strand at 738.496 kb on + strand at 738.507 kb on + strand at 738.511 kb on + strand at 738.521 kb on + strand at 738.529 kb on + strand at 738.539 kb on + strand at 738.557 kb on + strand at 738.586 kb on + strand at 738.598 kb on + strand at 738.606 kb on + strand at 738.606 kb on + strand at 738.606 kb on + strand at 738.606 kb on + strand at 738.614 kb on - strand at 738.614 kb on - strand at 738.614 kb on - strand at 738.614 kb on - strand at 738.614 kb on - strand at 738.617 kb on + strand at 738.622 kb on + strand at 738.635 kb on - strand at 738.640 kb on - strand at 738.640 kb on - strand at 738.640 kb on - strand at 738.640 kb on - strand at 738.660 kb on - strand at 738.660 kb on - strand at 738.660 kb on - strand at 738.685 kb on - strand at 738.696 kb on + strand at 738.714 kb on + strand at 738.714 kb on + strand at 738.717 kb on + strand at 738.737 kb on - strand at 738.740 kb on - strand at 738.740 kb on - strand at 738.743 kb on - strand at 738.754 kb on + strand at 738.791 kb on + strand at 738.814 kb on + strand at 738.819 kb on + strand at 738.819 kb on + strand at 738.822 kb on - strand at 738.824 kb on + strand at 738.832 kb on - strand at 738.844 kb on + strand at 738.844 kb on + strand at 738.844 kb on + strand at 738.845 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.852 kb on - strand at 738.852 kb on - strand at 738.853 kb on - strand at 738.854 kb on - strand at 738.854 kb on - strand at 738.854 kb on - strand at 738.854 kb on - strand at 738.854 kb on - strand at 738.869 kb on + strand at 738.919 kb on + strand at 738.927 kb on - strand at 738.928 kb on + strand at 738.932 kb on - strand at 738.947 kb on + strand at 738.970 kb on - strand at 738.970 kb on - strand at 738.970 kb on - strand at 738.970 kb on - strand at 738.970 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with CHIR-090 4 ug/mL remove 736,489 + +0.3 736,499 + +1.1 736,499 + +1.1 736,499 + -0.8 736,499 + +0.4 736,499 + -0.0 736,512 + +0.4 736,544 - +0.2 736,559 - +0.0 736,564 - -0.5 736,564 - -1.5 736,568 + +0.0 736,577 - +0.0 736,584 - -1.1 736,588 + +0.5 736,602 - -0.5 736,621 + -2.1 736,639 - -1.4 736,639 - -0.5 736,644 - -1.3 736,668 + -0.6 736,727 + CCNA_00680 0.18 -0.7 736,743 - CCNA_00680 0.21 -0.0 736,748 - CCNA_00680 0.21 -0.2 736,753 - CCNA_00680 0.22 -0.4 736,753 - CCNA_00680 0.22 +0.2 736,753 - CCNA_00680 0.22 -0.2 736,753 - CCNA_00680 0.22 -0.0 736,753 - CCNA_00680 0.22 -1.1 736,753 - CCNA_00680 0.22 -0.7 736,797 - CCNA_00680 0.29 -0.3 736,824 + CCNA_00680 0.33 -0.1 736,832 - CCNA_00680 0.35 +0.3 736,858 - CCNA_00680 0.39 +1.0 736,862 + CCNA_00680 0.39 +0.3 736,862 + CCNA_00680 0.39 +0.4 736,864 + CCNA_00680 0.40 -1.7 736,883 - CCNA_00680 0.43 +0.3 736,883 - CCNA_00680 0.43 +0.6 736,885 + CCNA_00680 0.43 -0.4 736,905 + CCNA_00680 0.46 +0.7 737,008 + CCNA_00680 0.62 +0.5 737,008 + CCNA_00680 0.62 -0.3 737,034 + CCNA_00680 0.66 +0.0 737,078 + CCNA_00680 0.73 -0.1 737,092 + CCNA_00680 0.75 -0.0 737,172 + CCNA_00680 0.88 -0.6 737,179 - CCNA_00680 0.89 +0.4 737,215 - -1.1 737,239 + +0.1 737,270 + -0.3 737,270 + -0.5 737,270 + +1.6 737,270 + -1.4 737,270 + -1.3 737,270 + +0.0 737,270 + -0.6 737,270 + -0.2 737,276 + -1.4 737,278 - +0.2 737,278 - -0.7 737,278 - -0.1 737,278 - +0.4 737,278 - -0.0 737,283 + -1.2 737,283 + -2.7 737,283 + -0.6 737,297 - -0.4 737,312 + -0.7 737,317 + -0.6 737,320 - CCNA_00681 0.10 -0.5 737,349 + CCNA_00681 0.14 -0.0 737,349 - CCNA_00681 0.14 +0.0 737,360 + CCNA_00681 0.16 -1.6 737,377 + CCNA_00681 0.18 -0.1 737,379 - CCNA_00681 0.18 -0.5 737,397 + CCNA_00681 0.21 +0.0 737,397 + CCNA_00681 0.21 -0.1 737,397 + CCNA_00681 0.21 +1.1 737,397 + CCNA_00681 0.21 +0.7 737,405 - CCNA_00681 0.22 -1.7 737,440 - CCNA_00681 0.27 -1.2 737,476 + CCNA_00681 0.31 -1.5 737,484 - CCNA_00681 0.33 +1.3 737,488 - CCNA_00681 0.33 -0.1 737,501 + CCNA_00681 0.35 -1.2 737,551 - CCNA_00681 0.42 +0.7 737,565 - CCNA_00681 0.43 -0.8 737,570 - CCNA_00681 0.44 +1.0 737,570 - CCNA_00681 0.44 -1.0 737,572 - CCNA_00681 0.44 -0.4 737,584 + CCNA_00681 0.46 -0.4 737,643 + CCNA_00681 0.54 -0.6 737,643 + CCNA_00681 0.54 +0.1 737,661 + CCNA_00681 0.57 -1.2 737,661 + CCNA_00681 0.57 -0.1 737,692 - CCNA_00681 0.61 -0.1 737,692 - CCNA_00681 0.61 -0.2 737,715 - CCNA_00681 0.64 +1.1 737,770 - CCNA_00681 0.71 -2.0 737,770 - CCNA_00681 0.71 +0.5 737,811 + CCNA_00681 0.77 -0.7 737,811 + CCNA_00681 0.77 -0.5 737,811 + CCNA_00681 0.77 +0.7 737,811 + CCNA_00681 0.77 -1.1 737,819 - CCNA_00681 0.78 -0.7 737,819 - CCNA_00681 0.78 -1.1 737,819 - CCNA_00681 0.78 +0.0 737,853 - CCNA_00681 0.83 -0.1 737,853 - CCNA_00681 0.83 -0.3 737,876 + CCNA_00681 0.86 +0.2 737,888 + CCNA_00681 0.87 -0.2 737,888 + CCNA_00681 0.87 -0.6 737,890 + CCNA_00681 0.88 +0.1 737,890 + CCNA_00681 0.88 -0.7 737,890 + CCNA_00681 0.88 +0.6 737,890 + CCNA_00681 0.88 +0.2 737,890 + CCNA_00681 0.88 -1.2 737,890 + CCNA_00681 0.88 -1.5 737,890 + CCNA_00681 0.88 +1.9 737,890 + CCNA_00681 0.88 +0.1 737,890 + CCNA_00681 0.88 -0.5 737,890 + CCNA_00681 0.88 -0.8 737,890 + CCNA_00681 0.88 -1.4 737,890 + CCNA_00681 0.88 -0.5 737,890 + CCNA_00681 0.88 +0.7 737,895 + CCNA_00681 0.88 +0.0 737,896 - CCNA_00681 0.88 -1.1 737,896 - CCNA_00681 0.88 -0.5 737,898 - CCNA_00681 0.89 -1.0 737,898 - CCNA_00681 0.89 -0.4 737,898 - CCNA_00681 0.89 +1.0 737,898 - CCNA_00681 0.89 -0.1 737,898 - CCNA_00681 0.89 -0.6 737,898 - CCNA_00681 0.89 +0.3 737,898 - CCNA_00681 0.89 +0.0 737,898 - CCNA_00681 0.89 -0.5 737,898 - CCNA_00681 0.89 +1.0 737,898 - CCNA_00681 0.89 +0.0 737,903 - CCNA_00681 0.89 +0.3 737,905 + CCNA_00681 0.90 -0.4 737,905 + CCNA_00681 0.90 -0.1 737,918 - +0.1 737,918 - +0.6 737,918 - -0.9 737,918 - +1.0 737,947 + +0.7 737,951 + -0.3 737,959 - -0.2 737,959 - -0.6 737,965 + -1.0 738,055 - +0.2 738,062 + -0.5 738,062 - +0.3 738,081 + +1.0 738,091 - -0.3 738,102 + -0.2 738,103 - +0.7 738,110 - -0.1 738,148 + CCNA_00682 0.16 +0.5 738,181 + CCNA_00682 0.23 +0.4 738,189 + CCNA_00682 0.25 +0.8 738,196 - CCNA_00682 0.26 -0.6 738,196 - CCNA_00682 0.26 +0.5 738,263 - CCNA_00682 0.41 -1.3 738,291 + CCNA_00682 0.47 +0.3 738,311 + CCNA_00682 0.51 +0.4 738,311 + CCNA_00682 0.51 +0.3 738,311 + CCNA_00682 0.51 -0.3 738,317 + CCNA_00682 0.53 -0.1 738,319 - CCNA_00682 0.53 -0.0 738,319 - CCNA_00682 0.53 +0.0 738,340 - CCNA_00682 0.58 +0.0 738,351 + CCNA_00682 0.60 -0.8 738,386 - CCNA_00682 0.68 -0.1 738,423 - CCNA_00682 0.76 -0.6 738,427 + CCNA_00682 0.76 +0.2 738,435 - CCNA_00682 0.78 -2.1 738,449 - CCNA_00682 0.81 -0.6 738,449 - CCNA_00682 0.81 -0.3 738,451 + CCNA_00682 0.82 +1.1 738,451 + CCNA_00682 0.82 +1.5 738,456 + CCNA_00682 0.83 +0.4 738,459 - CCNA_00682 0.83 -0.5 738,459 - CCNA_00682 0.83 +2.3 738,459 - CCNA_00682 0.83 -0.8 738,459 - CCNA_00682 0.83 -1.4 738,459 - CCNA_00682 0.83 -2.4 738,459 - CCNA_00682 0.83 -0.3 738,459 - CCNA_00682 0.83 -1.1 738,461 + CCNA_00682 0.84 +0.8 738,493 - +0.1 738,496 + +1.3 738,507 + +0.3 738,511 + +0.4 738,521 + +2.4 738,529 + +0.3 738,539 + -1.4 738,557 + +0.2 738,586 + -0.5 738,598 + +0.2 738,606 + -0.2 738,606 + +0.3 738,606 + +0.0 738,606 + -0.4 738,614 - -0.2 738,614 - -0.2 738,614 - -0.4 738,614 - -0.3 738,614 - +0.8 738,617 + -0.1 738,622 + -0.2 738,635 - +0.6 738,640 - +1.0 738,640 - +0.7 738,640 - -0.2 738,640 - -0.1 738,660 - +0.1 738,660 - -1.0 738,660 - -1.0 738,685 - +1.6 738,696 + -0.2 738,714 + +0.3 738,714 + +0.8 738,717 + +0.7 738,737 - +1.0 738,740 - -0.2 738,740 - -0.4 738,743 - -0.2 738,754 + -0.6 738,791 + -0.1 738,814 + +0.6 738,819 + -0.0 738,819 + +1.5 738,822 - +0.1 738,824 + +0.3 738,832 - -0.1 738,844 + -1.2 738,844 + +0.5 738,844 + +1.5 738,845 + +1.2 738,846 + +0.5 738,846 + +1.2 738,846 + -0.2 738,852 - +0.7 738,852 - +0.4 738,853 - -0.5 738,854 - -0.5 738,854 - +1.1 738,854 - +0.2 738,854 - -0.9 738,854 - +0.2 738,869 + -0.3 738,919 + -2.2 738,927 - +0.2 738,928 + -0.5 738,932 - +0.3 738,947 + -0.1 738,970 - +0.2 738,970 - -0.2 738,970 - +1.2 738,970 - +0.2 738,970 - +0.3
Or see this region's nucleotide sequence